Variant report

Variant	rs4798720
Chromosome Location	chr18:8936107-8936108
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12457614	0.83[ASN][1000 genomes]
rs4798721	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7228677	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8929200-8942800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr18:8931600-8937200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr18:8932200-8937000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr18:8933400-8936200	Weak transcription	K562	blood
5	chr18:8933400-8936800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr18:8933800-8937000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr18:8934200-8937000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr18:8934200-8937000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr18:8934200-8943200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr18:8934400-8936200	Weak transcription	Fetal Kidney	kidney
11	chr18:8935000-8937200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr18:8935200-8936800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr18:8936000-8937600	Enhancers	Stomach Mucosa	stomach
14	chr18:8936000-8939200	Enhancers	Placenta	Placenta
15	chr18:8936000-8939600	Enhancers	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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