Variant report

Variant	rs4798747
Chromosome Location	chr18:8992929-8992930
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4798741	0.88[ASN][1000 genomes]
rs4798742	0.82[ASN][1000 genomes]
rs4798746	0.81[AMR][1000 genomes]
rs8090221	0.99[ASN][1000 genomes]
rs9304026	0.89[ASN][1000 genomes]
rs931952	0.96[ASN][1000 genomes]
rs9959904	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv870110	chr18:8958418-9075363	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8988200-8994800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr18:8990600-8998800	Weak transcription	A549	lung
3	chr18:8990800-8994800	Weak transcription	HMEC	breast
4	chr18:8991400-8996600	Weak transcription	Liver	Liver
5	chr18:8991400-8998400	Weak transcription	Colon Smooth Muscle	Colon
6	chr18:8991400-8998600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr18:8991600-8996000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr18:8991600-8996200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr18:8991600-8998600	Weak transcription	NH-A	brain
10	chr18:8991800-8996000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr18:8991800-8996400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr18:8991800-8998600	Weak transcription	NHLF	lung
13	chr18:8992200-8994600	Weak transcription	NHDF-Ad	bronchial
14	chr18:8992600-8993000	Weak transcription	K562	blood
15	chr18:8992600-8994400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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