Variant report

Variant	rs4798765
Chromosome Location	chr18:9083403-9083404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:9079082..9081676-chr18:9082286..9085195,2	MCF-7	breast:
2	chr18:9079451..9081477-chr18:9081870..9084063,2	K562	blood:
3	chr18:9082088..9083716-chr18:9134364..9137304,2	MCF-7	breast:
4	chr18:9081658..9085593-chr18:9135853..9138394,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266053	Chromatin interaction
ENSG00000101745	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4798766	0.91[CEU][hapmap];0.96[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8095681	0.81[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv1832073	chr18:9048118-9094498	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv431971	chr18:9081185-9326852	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9078800-9083600	Enhancers	Placenta	Placenta
2	chr18:9079400-9084800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr18:9081200-9088000	Weak transcription	HepG2	liver
4	chr18:9081600-9086200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr18:9082000-9083600	Enhancers	Primary T cells fromperipheralblood	blood
6	chr18:9082000-9083600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr18:9082000-9084200	Enhancers	Primary T cells from cord blood	blood
8	chr18:9082000-9084800	Enhancers	Primary hematopoietic stem cells	blood
9	chr18:9082400-9084000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr18:9082400-9084600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr18:9082600-9083600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
12	chr18:9082600-9083800	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr18:9082600-9084000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
14	chr18:9082600-9084400	Enhancers	Primary B cells from peripheral blood	blood
15	chr18:9082600-9084400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr18:9082800-9083800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
17	chr18:9082800-9084200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr18:9082800-9084800	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr18:9083200-9084800	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr18:9083400-9083600	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr18:9083400-9084000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr18:9083400-9084200	Weak transcription	Fetal Thymus	thymus
23	chr18:9083400-9084200	Enhancers	GM12878-XiMat	blood
24	chr18:9083400-9084400	Enhancers	Primary B cells from cord blood	blood
25	chr18:9083400-9085800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr18:9083400-9086000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr18:9083400-9087200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr18:9083400-9090200	Weak transcription	K562	blood
29	chr18:9083400-9090600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr18:9083400-9095000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr18:9083400-9095200	Weak transcription	Duodenum Mucosa	Duodenum
32	chr18:9083400-9097200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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