Variant report

Variant	rs4799622
Chromosome Location	chr18:29590821-29590822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11875344	0.88[ASN][1000 genomes]
rs9947471	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065285	chr18:29527884-29614986	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29587000-29598000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr18:29588600-29598200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr18:29589200-29591200	Enhancers	Hela-S3	cervix
4	chr18:29589400-29591000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr18:29590200-29591000	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr18:29590400-29591000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr18:29590400-29591000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr18:29590600-29591000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr18:29590600-29597800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr18:29590800-29595800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr18:29590800-29596800	Weak transcription	Primary T cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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