Variant report

Variant	rs4799638
Chromosome Location	chr18:29740078-29740079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2276374	1.00[CHB][hapmap]
rs7232848	0.82[LWK][hapmap];0.83[TSI][hapmap]
rs73417819	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8086092	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29738600-29740200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr18:29738600-29740400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr18:29738600-29740400	Weak transcription	HMEC	breast
4	chr18:29738600-29741200	Enhancers	Fetal Intestine Large	intestine
5	chr18:29738600-29741200	Enhancers	Fetal Intestine Small	intestine
6	chr18:29738600-29741200	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr18:29738800-29741200	Weak transcription	Colonic Mucosa	Colon
8	chr18:29739200-29740400	Enhancers	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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