Variant report

Variant	rs4802204
Chromosome Location	chr19:44597295-44597296
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:44596713..44600957-chr19:44644435..44647275,5	MCF-7	breast:
2	chr19:44596073..44597984-chr19:44710588..44712283,2	K562	blood:
3	chr19:44589107..44593140-chr19:44596665..44599244,3	MCF-7	breast:
4	chr19:44555737..44557669-chr19:44596681..44600019,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253021	Chromatin interaction
ENSG00000178386	Chromatin interaction
ENSG00000131115	Chromatin interaction
ENSG00000263002	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10410306	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10420143	0.96[ASN][1000 genomes]
rs10853771	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2061332	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2061333	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2284981	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28446946	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28539456	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3172	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3200505	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3746319	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3746321	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4429390	0.86[EUR][1000 genomes]
rs4459653	0.87[EUR][1000 genomes]
rs4508518	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4802205	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4802206	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4802207	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4803681	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55876899	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56353321	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62115524	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62115526	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7250004	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7250005	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7508149	0.92[ASN][1000 genomes]
rs8099869	0.82[AMR][1000 genomes]
rs8104573	0.95[ASN][1000 genomes]
rs8105860	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8108021	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8108404	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8113750	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833840	chr19:44520620-44715760	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4802204	ZNF224	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44577000-44598000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:44577200-44598000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr19:44577600-44597800	Weak transcription	HMEC	breast
4	chr19:44586800-44598000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr19:44587000-44597800	Weak transcription	HUVEC	blood vessel
6	chr19:44587000-44598000	Weak transcription	Fetal Thymus	thymus
7	chr19:44587200-44597800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr19:44588400-44597600	Weak transcription	HepG2	liver
9	chr19:44588600-44597800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr19:44588600-44597800	Weak transcription	GM12878-XiMat	blood
11	chr19:44589200-44598000	Weak transcription	Colonic Mucosa	Colon
12	chr19:44589400-44598000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr19:44589400-44598200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr19:44589600-44598000	Weak transcription	Right Ventricle	heart
15	chr19:44590000-44598200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr19:44590200-44597800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr19:44590200-44598200	Weak transcription	Esophagus	oesophagus
18	chr19:44590400-44598000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr19:44590400-44598000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr19:44590400-44598000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr19:44590400-44598000	Weak transcription	NHEK	skin
22	chr19:44590600-44598000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr19:44590600-44598000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr19:44590600-44598000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr19:44590600-44598000	Weak transcription	Placenta	Placenta
26	chr19:44590800-44597800	Weak transcription	NHLF	lung
27	chr19:44590800-44598000	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr19:44590800-44598000	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr19:44590800-44598000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr19:44590800-44598000	Weak transcription	Colon Smooth Muscle	Colon
31	chr19:44590800-44598000	Weak transcription	Fetal Brain Male	brain
32	chr19:44590800-44598200	Weak transcription	Gastric	stomach
33	chr19:44591000-44597800	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr19:44591000-44597800	Weak transcription	Osteobl	bone
35	chr19:44591000-44598000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr19:44591000-44598000	Weak transcription	Primary B cells from peripheral blood	blood
37	chr19:44591000-44598000	Weak transcription	Fetal Kidney	kidney
38	chr19:44591200-44597800	Weak transcription	Primary hematopoietic stem cells	blood
39	chr19:44591200-44597800	Weak transcription	Brain Anterior Caudate	brain
40	chr19:44591200-44597800	Weak transcription	Duodenum Mucosa	Duodenum
41	chr19:44591200-44597800	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr19:44591200-44598000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr19:44591200-44598000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr19:44591200-44598000	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr19:44591200-44598000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr19:44591200-44598000	Weak transcription	Brain Angular Gyrus	brain
47	chr19:44591200-44598000	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr19:44591200-44598000	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr19:44591200-44598000	Weak transcription	HSMMtube	muscle
50	chr19:44591200-44598000	Weak transcription	NH-A	brain

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