Variant report

Variant	rs4803356
Chromosome Location	chr19:41207206-41207207
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:41193182..41199089-chr19:41206241..41209564,9	MCF-7	breast:
2	chr19:41205738..41209357-chr19:41220858..41225801,5	MCF-7	breast:
3	chr19:41195052..41198475-chr19:41206836..41210574,5	K562	blood:
4	chr19:41206422..41208384-chr19:41260383..41263313,2	K562	blood:
5	chr19:41193560..41201987-chr19:41206623..41212331,16	K562	blood:
6	chr19:41204648..41207445-chr19:41212507..41214384,2	K562	blood:
7	chr19:41206945..41208497-chr19:41254996..41257251,2	K562	blood:

Variant related genes	Relation type
ENSG00000077312	Chromatin interaction
ENSG00000086544	Chromatin interaction
ENSG00000105245	Chromatin interaction
ENSG00000188493	Chromatin interaction
ENSG00000123815	Chromatin interaction
ENSG00000223284	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4802083	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830682	chr19:40880127-41270055	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
2	nsv911728	chr19:41111069-41211056	Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	esv1800615	chr19:41127465-41270055	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	nsv1067017	chr19:41185992-41231251	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41197000-41207600	Weak transcription	Fetal Kidney	kidney
2	chr19:41197000-41208000	Weak transcription	Small Intestine	intestine
3	chr19:41197200-41207400	Weak transcription	Stomach Mucosa	stomach
4	chr19:41197200-41210000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr19:41197200-41210600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr19:41197200-41220200	Weak transcription	Fetal Heart	heart
7	chr19:41197200-41220600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr19:41197400-41207600	Weak transcription	NHDF-Ad	bronchial
9	chr19:41197400-41210600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr19:41197400-41219800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr19:41197400-41220000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr19:41197400-41220000	Strong transcription	Fetal Intestine Small	intestine
13	chr19:41197400-41220200	Weak transcription	HUVEC	blood vessel
14	chr19:41197600-41208800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr19:41197600-41216000	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr19:41197600-41220200	Weak transcription	Psoas Muscle	Psoas
17	chr19:41197800-41207400	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr19:41197800-41208200	Strong transcription	Fetal Stomach	stomach
19	chr19:41197800-41211000	Weak transcription	Right Atrium	heart
20	chr19:41197800-41219000	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr19:41198000-41207800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr19:41198000-41208200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr19:41198200-41208400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr19:41198400-41207600	Weak transcription	HSMM	muscle
25	chr19:41198400-41219800	Weak transcription	NH-A	brain
26	chr19:41198600-41207800	Weak transcription	K562	blood
27	chr19:41199000-41217600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr19:41200200-41207800	Weak transcription	Fetal Brain Male	brain
29	chr19:41200200-41211800	Strong transcription	Ovary	ovary
30	chr19:41200400-41209400	Strong transcription	Fetal Muscle Trunk	muscle
31	chr19:41201000-41207600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr19:41201800-41207600	Weak transcription	Dnd41	blood
33	chr19:41201800-41209800	Weak transcription	Hela-S3	cervix
34	chr19:41202000-41207400	Weak transcription	HSMMtube	muscle
35	chr19:41202200-41208200	Weak transcription	HepG2	liver
36	chr19:41203400-41207600	Weak transcription	NHEK	skin
37	chr19:41204200-41212400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr19:41204200-41219800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr19:41204400-41208000	Strong transcription	Stomach Smooth Muscle	stomach
40	chr19:41204400-41208400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr19:41204400-41208400	Strong transcription	A549	lung
42	chr19:41204400-41210800	Strong transcription	Left Ventricle	heart
43	chr19:41204400-41211200	Strong transcription	Adipose Nuclei	Adipose
44	chr19:41204400-41211600	Strong transcription	Fetal Brain Female	brain
45	chr19:41204400-41212400	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr19:41204400-41212600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr19:41204400-41212800	Strong transcription	Brain Germinal Matrix	brain
48	chr19:41204400-41213800	Strong transcription	Lung	lung
49	chr19:41204400-41215800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr19:41204400-41216200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links