Variant report

Variant	rs4803359
Chromosome Location	chr19:41216889-41216890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:41211245..41213405-chr19:41215813..41217880,2	MCF-7	breast:
2	chr19:41210809..41213547-chr19:41214438..41217291,3	K562	blood:
3	chr19:41196345..41198715-chr19:41214353..41217154,2	K562	blood:
4	chr19:41216506..41219364-chr19:41220108..41222440,2	K562	blood:

Variant related genes	Relation type
ENSG00000123815	Chromatin interaction
ENSG00000105245	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11538384	1.00[EUR][1000 genomes]
rs4802083	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4802084	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4803357	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4803362	0.82[EUR][1000 genomes]
rs62621363	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830682	chr19:40880127-41270055	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
2	esv1800615	chr19:41127465-41270055	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv1067017	chr19:41185992-41231251	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41197200-41220200	Weak transcription	Fetal Heart	heart
2	chr19:41197200-41220600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr19:41197400-41219800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr19:41197400-41220000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr19:41197400-41220000	Strong transcription	Fetal Intestine Small	intestine
6	chr19:41197400-41220200	Weak transcription	HUVEC	blood vessel
7	chr19:41197600-41220200	Weak transcription	Psoas Muscle	Psoas
8	chr19:41197800-41219000	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr19:41198400-41219800	Weak transcription	NH-A	brain
10	chr19:41199000-41217600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr19:41204200-41219800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr19:41204400-41219000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr19:41204600-41217400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr19:41204600-41217800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr19:41204600-41219400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr19:41205000-41217800	Strong transcription	Fetal Thymus	thymus
17	chr19:41205000-41219000	Strong transcription	Fetal Intestine Large	intestine
18	chr19:41205200-41218800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr19:41205200-41218800	Strong transcription	Duodenum Mucosa	Duodenum
20	chr19:41205400-41217000	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr19:41205400-41218000	Strong transcription	Brain Hippocampus Middle	brain
22	chr19:41205400-41219000	Strong transcription	Liver	Liver
23	chr19:41205400-41219200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr19:41205400-41220200	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr19:41205600-41218800	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr19:41205600-41219200	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr19:41205800-41219400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr19:41206400-41219800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr19:41208400-41217200	Weak transcription	NHDF-Ad	bronchial
30	chr19:41208600-41220000	Strong transcription	Fetal Stomach	stomach
31	chr19:41208800-41217400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr19:41208800-41220000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr19:41208800-41220200	Weak transcription	Stomach Mucosa	stomach
34	chr19:41208800-41221000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr19:41209000-41219000	Strong transcription	A549	lung
36	chr19:41209200-41219200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr19:41209200-41220200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr19:41209600-41217800	Strong transcription	Stomach Smooth Muscle	stomach
39	chr19:41210800-41220200	Weak transcription	Fetal Brain Male	brain
40	chr19:41210800-41220200	Weak transcription	K562	blood
41	chr19:41211000-41220000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr19:41211200-41218600	Weak transcription	HSMMtube	muscle
43	chr19:41211400-41220200	Weak transcription	Hela-S3	cervix
44	chr19:41211400-41220400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr19:41211400-41220400	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr19:41211600-41219800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr19:41211800-41219800	Weak transcription	HMEC	breast
48	chr19:41211800-41220000	Weak transcription	Gastric	stomach
49	chr19:41211800-41220000	Weak transcription	Pancreas	Pancrea
50	chr19:41211800-41220200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links