Variant report

Variant	rs4803470
Chromosome Location	chr19:41960711-41960712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10853753	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12975047	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2005832	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs3745286	0.95[CHB][hapmap];0.87[AMR][1000 genomes]
rs4293494	0.94[CHB][hapmap];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4803471	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4803472	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4803473	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7248484	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7258077	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8110081	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs4803470	RASIP1	cis	cerebellum	SCAN
rs4803470	HRC	cis	parietal	SCAN
rs4803470	HSD17B14	cis	parietal	SCAN
rs4803470	CEACAM16	cis	cerebellum	SCAN
rs4803470	APOBEC3H	trans	parietal	SCAN
rs4803470	PSG9	cis	parietal	SCAN
rs4803470	SCAF1	cis	cerebellum	SCAN
rs4803470	STRN4	cis	cerebellum	SCAN
rs4803470	SLC6A16	cis	cerebellum	SCAN
rs4803470	CD177	cis	cerebellum	SCAN
rs4803470	GRIN2D	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41955600-41962600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr19:41955800-41961200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr19:41955800-41962200	Weak transcription	Fetal Intestine Small	intestine
4	chr19:41955800-41962400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr19:41955800-41962400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr19:41955800-41963000	Weak transcription	Fetal Intestine Large	intestine
7	chr19:41956000-41961600	Weak transcription	Left Ventricle	heart
8	chr19:41958800-41961600	Weak transcription	Spleen	Spleen
9	chr19:41959600-41961200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr19:41960000-41961400	Strong transcription	HUVEC	blood vessel
11	chr19:41960200-41961000	Enhancers	GM12878-XiMat	blood
12	chr19:41960400-41960800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr19:41960400-41962600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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