Variant report

Variant	rs4803656
Chromosome Location	chr19:44234704-44234705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:44232809..44235611-chr19:44259623..44261402,2	MCF-7	breast:
2	chr19:44232323..44234866-chr19:44238850..44240438,2	K562	blood:
3	chr19:44233938..44235520-chr19:44235832..44237426,2	MCF-7	breast:
4	chr19:44232167..44234766-chr19:44301768..44304343,2	K562	blood:
5	chr19:44232159..44237751-chr19:44257333..44261887,5	K562	blood:
6	chr19:44233925..44236266-chr19:44240969..44243055,2	K562	blood:

Variant related genes	Relation type
ENSG00000159871	Chromatin interaction
ENSG00000105771	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10404922	0.93[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10416580	0.81[LWK][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10418355	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10423765	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10426756	1.00[AMR][1000 genomes]
rs28483837	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28544228	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59204851	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59800457	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61676505	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532821	chr19:43842383-44357315	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv833839	chr19:44099813-44272299	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44220400-44240400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:44224400-44235000	Weak transcription	Hela-S3	cervix
3	chr19:44229400-44235000	Weak transcription	Stomach Mucosa	stomach
4	chr19:44229400-44258000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr19:44230000-44240000	Weak transcription	K562	blood
6	chr19:44230200-44235800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr19:44230200-44236000	Weak transcription	HUVEC	blood vessel
8	chr19:44231000-44235600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr19:44231400-44236200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr19:44231400-44236800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr19:44231400-44236800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr19:44231400-44256200	Strong transcription	Thymus	Thymus
13	chr19:44231400-44256400	Strong transcription	Fetal Stomach	stomach
14	chr19:44231600-44235000	Weak transcription	Brain Angular Gyrus	brain
15	chr19:44231600-44236800	Weak transcription	Fetal Heart	heart
16	chr19:44231600-44242800	Strong transcription	Fetal Intestine Small	intestine
17	chr19:44231600-44256200	Strong transcription	Stomach Smooth Muscle	stomach
18	chr19:44231800-44235800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr19:44231800-44240000	Weak transcription	Psoas Muscle	Psoas
20	chr19:44231800-44245400	Weak transcription	Right Atrium	heart
21	chr19:44232000-44235400	Strong transcription	Placenta	Placenta
22	chr19:44232000-44236000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr19:44232000-44236000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr19:44232000-44236400	Strong transcription	Brain Hippocampus Middle	brain
25	chr19:44232000-44236400	Weak transcription	HepG2	liver
26	chr19:44232000-44243200	Strong transcription	Duodenum Mucosa	Duodenum
27	chr19:44232000-44256200	Strong transcription	Fetal Brain Female	brain
28	chr19:44232000-44256600	Strong transcription	Brain Cingulate Gyrus	brain
29	chr19:44232200-44235400	Strong transcription	Fetal Muscle Leg	muscle
30	chr19:44232200-44235600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr19:44232200-44235600	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr19:44232200-44235800	Strong transcription	Adipose Nuclei	Adipose
33	chr19:44232200-44236000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr19:44232200-44236200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr19:44232200-44236400	Strong transcription	Primary B cells from cord blood	blood
36	chr19:44232200-44237800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr19:44232200-44238400	Strong transcription	Brain Germinal Matrix	brain
38	chr19:44232200-44238800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr19:44232200-44238800	Strong transcription	Brain Inferior Temporal Lobe	brain
40	chr19:44232200-44238800	Strong transcription	Left Ventricle	heart
41	chr19:44232200-44239000	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr19:44232200-44239400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr19:44232200-44239400	Strong transcription	Placenta Amnion	Placenta Amnion
44	chr19:44232200-44241600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr19:44232200-44241800	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr19:44232200-44243000	Strong transcription	Fetal Intestine Large	intestine
47	chr19:44232200-44243200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr19:44232200-44243200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr19:44232200-44243200	Strong transcription	Skeletal Muscle Male	skeletal muscle
50	chr19:44232200-44248800	Strong transcription	Primary B cells from peripheral blood	blood

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