Variant report

Variant	rs4806183
Chromosome Location	chr19:36100386-36100387
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2239914	0.83[CHB][hapmap];0.93[JPT][hapmap];0.85[YRI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2285414	0.90[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2285415	0.83[CHB][hapmap];0.93[JPT][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4547459	0.91[ASN][1000 genomes]
rs4806180	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4806181	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs756783	0.88[ASN][1000 genomes]
rs756784	0.84[CHB][hapmap];0.93[JPT][hapmap];0.86[YRI][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8110747	0.91[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs916659	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4806183	AC002398.13	cis	Thyroid	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36096200-36102800	Weak transcription	Stomach Mucosa	stomach
2	chr19:36099200-36103200	Enhancers	Primary B cells from peripheral blood	blood
3	chr19:36099400-36100400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr19:36100200-36101600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr19:36100200-36101800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr19:36100200-36102200	Enhancers	Primary B cells from cord blood	blood
7	chr19:36100200-36102200	Enhancers	Primary T cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links