Variant report

Variant	rs4814155
Chromosome Location	chr20:12708838-12708839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1333383	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1333391	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1333392	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2210565	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2210566	0.91[EUR][1000 genomes]
rs2327467	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2327468	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2327469	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2876247	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55751885	0.86[ASN][1000 genomes]
rs6033503	0.98[ASN][1000 genomes]
rs6033504	0.98[ASN][1000 genomes]
rs6033505	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6041574	0.88[ASN][1000 genomes]
rs6041580	1.00[ASN][1000 genomes]
rs6041582	0.96[ASN][1000 genomes]
rs6041584	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73261113	0.88[ASN][1000 genomes]
rs73899272	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058919	chr20:11917331-12733316	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv544183	chr20:11917331-12733316	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv18943	chr20:12627634-12841804	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:12703200-12724200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr20:12703600-12709400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr20:12703800-12709400	Weak transcription	HMEC	breast
4	chr20:12704800-12709200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr20:12708000-12710000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr20:12708800-12710000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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