Variant report

Variant	rs481568
Chromosome Location	chr15:54812162-54812163
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs624001	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs624071	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv275383	chr15:54810814-54814852	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54807000-54820600	Weak transcription	Fetal Brain Male	brain
2	chr15:54809000-54814000	Weak transcription	Ovary	ovary
3	chr15:54809600-54814400	Enhancers	Fetal Lung	lung
4	chr15:54811000-54812200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr15:54811000-54812600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:54811000-54869600	Weak transcription	Aorta	Aorta
7	chr15:54811200-54812400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:54811400-54812200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr15:54811600-54812200	Active TSS	Monocytes-CD14+_RO01746	blood
10	chr15:54811600-54812400	Enhancers	GM12878-XiMat	blood
11	chr15:54811800-54812200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr15:54811800-54812400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr15:54811800-54812600	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr15:54811800-54812800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr15:54811800-54813800	Weak transcription	Fetal Kidney	kidney
16	chr15:54812000-54812200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr15:54812000-54812200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr15:54812000-54812400	Enhancers	Primary B cells from cord blood	blood
19	chr15:54812000-54813000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr15:54812000-54813200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr15:54812000-54813600	Enhancers	Primary T cells from cord blood	blood
22	chr15:54812000-54814400	Enhancers	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links