Variant report
| Variant | rs4817152 |
|---|---|
| Chromosome Location | chr21:28468918-28468919 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11701686 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11702316 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11702460 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2027706 | 0.91[ASN][1000 genomes] |
| rs2027707 | 0.91[ASN][1000 genomes] |
| rs2027708 | 0.91[ASN][1000 genomes] |
| rs2027709 | 0.91[ASN][1000 genomes] |
| rs2212822 | 0.85[ASN][1000 genomes] |
| rs2212823 | 0.85[ASN][1000 genomes] |
| rs2226779 | 0.85[ASN][1000 genomes] |
| rs2226780 | 0.84[ASN][1000 genomes] |
| rs4817153 | 0.89[ASN][1000 genomes] |
| rs4817154 | 0.91[ASN][1000 genomes] |
| rs4817155 | 0.91[ASN][1000 genomes] |
| rs56204727 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56212014 | 0.94[ASN][1000 genomes] |
| rs62222953 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7276268 | 0.85[ASN][1000 genomes] |
| rs7279803 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8126792 | 0.85[ASN][1000 genomes] |
| rs8129454 | 0.85[ASN][1000 genomes] |
| rs8129669 | 0.89[ASN][1000 genomes] |
| rs8129706 | 0.91[ASN][1000 genomes] |
| rs955742 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1067475 | chr21:28238746-29046707 | Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 2 | esv2758532 | chr21:28380230-28540443 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| 3 | esv2758817 | chr21:28380230-28540443 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| 4 | nsv1062808 | chr21:28443252-28537209 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| 5 | nsv544414 | chr21:28443252-28537209 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:28458800-28477600 | Weak transcription | Fetal Kidney | kidney |
