Variant report

Variant	rs4820822
Chromosome Location	chr22:30245160-30245161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1071888	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12168552	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17643918	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2105870	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2349225	0.81[AMR][1000 genomes]
rs34862234	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35705048	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36578	0.81[AMR][1000 genomes]
rs36580	0.85[EUR][1000 genomes]
rs36590	0.85[EUR][1000 genomes]
rs36591	0.85[EUR][1000 genomes]
rs36594	0.84[EUR][1000 genomes]
rs36596	0.84[EUR][1000 genomes]
rs36598	0.84[EUR][1000 genomes]
rs36600	0.84[EUR][1000 genomes]
rs36601	0.84[EUR][1000 genomes]
rs36604	0.84[EUR][1000 genomes]
rs36605	0.84[EUR][1000 genomes]
rs36606	0.84[EUR][1000 genomes]
rs36607	0.84[EUR][1000 genomes]
rs3887275	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3958025	0.83[EUR][1000 genomes]
rs39712	0.81[EUR][1000 genomes]
rs4820820	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4823055	0.81[EUR][1000 genomes]
rs4823063	0.85[EUR][1000 genomes]
rs4993442	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5752968	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs5752986	0.81[EUR][1000 genomes]
rs5763630	0.81[EUR][1000 genomes]
rs5763634	0.81[EUR][1000 genomes]
rs715523	0.80[EUR][1000 genomes]
rs7286070	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7292615	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs737904	0.81[EUR][1000 genomes]
rs8136147	0.85[EUR][1000 genomes]
rs8139994	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8141680	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9620926	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9625873	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9625874	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9625878	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9625879	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529742	chr22:29677909-30274388	Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	esv1829662	chr22:30171725-30304390	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	esv1829425	chr22:30184378-30297376	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30243400-30245600	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr22:30244200-30245800	Enhancers	Fetal Muscle Leg	muscle
3	chr22:30245000-30250200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr22:30245000-30250400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr22:30245000-30250600	Weak transcription	Adipose Nuclei	Adipose
6	chr22:30245000-30251400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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