Variant report

Variant	rs4822906
Chromosome Location	chr22:27951682-27951683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12159947	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16985031	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4822905	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4822910	0.92[ASN][1000 genomes]
rs4822911	0.86[ASN][1000 genomes]
rs6005510	0.96[AFR][1000 genomes]
rs723183	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413125	chr22:27404463-28121577	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv459860	chr22:27527005-28181436	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv588872	chr22:27527005-28181436	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv834168	chr22:27859692-28061869	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv588877	chr22:27930080-28094845	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:27945000-27953200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr22:27947000-27952800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr22:27949600-27953800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr22:27950400-27951800	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr22:27950600-27953800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr22:27950600-27954200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr22:27951000-27952400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr22:27951000-27952600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr22:27951000-27952800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr22:27951000-27952800	Weak transcription	Fetal Intestine Large	intestine
11	chr22:27951000-27953200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr22:27951000-27953200	Weak transcription	Fetal Intestine Small	intestine
13	chr22:27951000-27954200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr22:27951000-27954600	Enhancers	Brain Germinal Matrix	brain
15	chr22:27951200-27952600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr22:27951200-27952600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr22:27951200-27952600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr22:27951200-27952600	Weak transcription	Fetal Brain Male	brain
19	chr22:27951200-27953000	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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