Variant report

Variant	rs4822954
Chromosome Location	chr22:28584917-28584918
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs134173	0.90[ASN][1000 genomes]
rs134176	0.90[ASN][1000 genomes]
rs134177	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs134178	0.90[ASN][1000 genomes]
rs134183	0.91[EUR][1000 genomes]
rs134193	0.88[ASN][1000 genomes]
rs5762553	0.82[ASN][1000 genomes]
rs7284814	0.82[EUR][1000 genomes]
rs8140229	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28572200-28597800	Weak transcription	Dnd41	blood
2	chr22:28577000-28603600	Weak transcription	Aorta	Aorta
3	chr22:28577800-28600400	Weak transcription	Right Atrium	heart
4	chr22:28579600-28587400	Weak transcription	Lung	lung
5	chr22:28582800-28585000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr22:28582800-28585000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr22:28583000-28585000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr22:28583200-28585000	Enhancers	H9 Cell Line	embryonic stem cell
9	chr22:28583400-28585000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr22:28583400-28585000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr22:28583400-28585400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr22:28583600-28585200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr22:28583800-28589000	Weak transcription	Fetal Lung	lung
14	chr22:28584200-28585000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr22:28584600-28585200	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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