Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:170129471..170132945-chr1:170134793..170138535,3	K562	blood:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10800501	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1411464	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2786921	0.87[EUR][1000 genomes]
rs471155	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs471569	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs471781	0.86[EUR][1000 genomes]
rs493966	0.83[EUR][1000 genomes]
rs495125	0.87[EUR][1000 genomes]
rs495524	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs504942	0.87[EUR][1000 genomes]
rs514257	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs522361	0.87[EUR][1000 genomes]
rs523222	0.87[EUR][1000 genomes]
rs524309	0.87[EUR][1000 genomes]
rs525285	0.87[EUR][1000 genomes]
rs532141	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs533387	0.87[EUR][1000 genomes]
rs548356	0.87[EUR][1000 genomes]
rs548582	0.87[EUR][1000 genomes]
rs550297	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs551042	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs563559	0.87[EUR][1000 genomes]
rs572480	0.86[EUR][1000 genomes]
rs575119	0.87[EUR][1000 genomes]
rs576152	0.87[EUR][1000 genomes]
rs579438	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6704499	0.87[EUR][1000 genomes]
rs9427182	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv999310	chr1:170065943-170223350	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv3454	chr1:170134880-170149447	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170132400-170140200	Weak transcription	Right Ventricle	heart
2	chr1:170132800-170140600	Weak transcription	Fetal Heart	heart
3	chr1:170137200-170138200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr1:170137600-170138400	Enhancers	HSMMtube	muscle
5	chr1:170137800-170138200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr1:170138000-170138400	Enhancers	Dnd41	blood

Quick Search: