Variant report

Variant	rs4832005
Chromosome Location	chr2:85952162-85952163
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:85937591..85939092-chr2:85951600..85953436,2	K562	blood:
2	chr2:85944996..85948043-chr2:85949115..85952317,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2176625	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4832188	0.91[ASN][1000 genomes]
rs7425090	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874468	chr2:85926598-86001255	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv527770	chr2:85949396-85962551	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:85941200-85967400	Weak transcription	Esophagus	oesophagus
2	chr2:85947200-85952200	Weak transcription	Ovary	ovary
3	chr2:85947600-85956600	Weak transcription	Right Ventricle	heart
4	chr2:85947600-85957000	Weak transcription	Psoas Muscle	Psoas
5	chr2:85950000-85952800	Enhancers	Adipose Nuclei	Adipose
6	chr2:85950200-85953000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr2:85950400-85952600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr2:85950400-85953000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr2:85950400-85953600	Enhancers	Liver	Liver
10	chr2:85950600-85953000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:85950800-85952600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr2:85950800-85952600	Enhancers	NHDF-Ad	bronchial
13	chr2:85951000-85952200	Enhancers	Placenta	Placenta
14	chr2:85951000-85956400	Weak transcription	Colonic Mucosa	Colon
15	chr2:85951000-85959600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr2:85951200-85952600	Enhancers	Fetal Muscle Leg	muscle
17	chr2:85951200-85953400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
18	chr2:85951400-85952200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr2:85951400-85952400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr2:85951600-85952200	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr2:85951600-85952200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr2:85951600-85953000	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr2:85951800-85952400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr2:85951800-85952400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
25	chr2:85951800-85952400	Weak transcription	Fetal Kidney	kidney
26	chr2:85951800-85952400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
27	chr2:85951800-85952400	Enhancers	Left Ventricle	heart
28	chr2:85951800-85952400	Enhancers	Lung	lung
29	chr2:85951800-85952400	Enhancers	Right Atrium	heart
30	chr2:85951800-85952400	Enhancers	Spleen	Spleen
31	chr2:85952000-85952200	Enhancers	Brain Anterior Caudate	brain
32	chr2:85952000-85952600	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr2:85952000-85956000	Weak transcription	Osteobl	bone

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