Variant report

Variant	rs4832211
Chromosome Location	chr2:86094179-86094180
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFF	chr2:86093663-86095401	K562	blood:	n/a	chr2:86094440-86094458
2	MAFK	chr2:86093961-86094968	H1-hESC	embryonic stem cell:	n/a	chr2:86094441-86094456
3	MAFK	chr2:86093431-86095182	GM12878	blood:	n/a	chr2:86094441-86094456

Variant related genes	Relation type
ST3GAL5	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10865479	0.93[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12463901	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12714153	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2366948	0.92[CEU][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4432451	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4446072	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4832214	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6547638	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6720628	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86066000-86106200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:86067000-86099000	Weak transcription	Gastric	stomach
3	chr2:86071800-86096200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:86072000-86096800	Weak transcription	Psoas Muscle	Psoas
5	chr2:86075400-86114000	Weak transcription	Aorta	Aorta
6	chr2:86079600-86106200	Weak transcription	Brain Germinal Matrix	brain
7	chr2:86081000-86112400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr2:86081600-86095000	Weak transcription	Pancreas	Pancrea
9	chr2:86081600-86099200	Weak transcription	Left Ventricle	heart
10	chr2:86081600-86100600	Weak transcription	NHDF-Ad	bronchial
11	chr2:86082000-86099000	Weak transcription	Right Ventricle	heart
12	chr2:86086800-86113000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr2:86087400-86096800	Weak transcription	NHEK	skin
14	chr2:86087400-86101800	Weak transcription	Fetal Brain Female	brain
15	chr2:86088200-86099000	Weak transcription	Adipose Nuclei	Adipose
16	chr2:86088400-86105400	Weak transcription	Osteobl	bone
17	chr2:86088600-86111600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:86089000-86102600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr2:86089400-86094800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr2:86089800-86100000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr2:86089800-86106000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr2:86089800-86106000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr2:86090400-86094600	Weak transcription	A549	lung
24	chr2:86090400-86096000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr2:86090400-86097400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr2:86090400-86099800	Weak transcription	Spleen	Spleen
27	chr2:86090400-86102600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr2:86090400-86104600	Weak transcription	Liver	Liver
29	chr2:86090600-86094200	Enhancers	Brain Hippocampus Middle	brain
30	chr2:86090600-86096200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr2:86090600-86096200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr2:86090600-86096800	Weak transcription	Fetal Muscle Leg	muscle
33	chr2:86090600-86097200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr2:86090600-86109000	Weak transcription	Fetal Stomach	stomach
35	chr2:86090600-86110600	Weak transcription	Fetal Muscle Trunk	muscle
36	chr2:86090800-86094400	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr2:86090800-86094800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr2:86090800-86095000	Weak transcription	Thymus	Thymus
39	chr2:86090800-86096000	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr2:86091000-86095200	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr2:86091400-86101400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr2:86092000-86095000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr2:86092000-86095000	Genic enhancers	Fetal Thymus	thymus
44	chr2:86092000-86095200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr2:86092200-86096800	Weak transcription	Lung	lung
46	chr2:86092200-86105200	Weak transcription	Right Atrium	heart
47	chr2:86092600-86094200	Enhancers	Brain Substantia Nigra	brain
48	chr2:86092600-86094800	Enhancers	Primary T cells fromperipheralblood	blood
49	chr2:86092600-86094800	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr2:86092800-86094800	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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