Variant report

Variant	rs4833278
Chromosome Location	chr4:124326535-124326536
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:124319526..124321146-chr4:124325161..124327653,2	MCF-7	breast:
2	chr4:124321330..124323743-chr4:124325294..124328181,3	K562	blood:
3	chr4:124325242..124326902-chr4:124400346..124402641,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164056	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10518414	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11098709	0.91[ASN][1000 genomes]
rs13145927	0.91[ASN][1000 genomes]
rs13150612	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs188513	0.89[ASN][1000 genomes]
rs28477228	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28514996	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300555	0.93[ASN][1000 genomes]
rs300572	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs300573	0.82[ASN][1000 genomes]
rs300574	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs4833277	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9992811	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006945	chr4:124206328-124503863	Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv537240	chr4:124206328-124503863	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv34581	chr4:124271321-125247395	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:124317400-124327000	Active TSS	Right Atrium	heart
2	chr4:124318800-124327000	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:124321400-124337200	Weak transcription	A549	lung
4	chr4:124321600-124328000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:124321600-124328000	Weak transcription	Small Intestine	intestine
6	chr4:124321800-124337400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr4:124322000-124327600	Weak transcription	Fetal Brain Female	brain
8	chr4:124322400-124334000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:124322600-124326600	Weak transcription	Fetal Heart	heart
10	chr4:124322800-124339000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr4:124323000-124326600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:124323000-124327200	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:124323200-124326800	Genic enhancers	Fetal Intestine Large	intestine
14	chr4:124323400-124326600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:124323400-124332800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:124323600-124326800	Strong transcription	HSMM	muscle
17	chr4:124323600-124328000	Weak transcription	Esophagus	oesophagus
18	chr4:124323600-124334400	Weak transcription	Gastric	stomach
19	chr4:124323800-124327000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:124323800-124328000	Weak transcription	Pancreas	Pancrea
21	chr4:124323800-124332800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr4:124323800-124333200	Weak transcription	Primary T cells from cord blood	blood
23	chr4:124323800-124337400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr4:124323800-124339400	Weak transcription	Brain Anterior Caudate	brain
25	chr4:124324000-124328000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:124324000-124328000	Weak transcription	Lung	lung
27	chr4:124324000-124333600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr4:124324000-124334000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr4:124324000-124334000	Weak transcription	NHDF-Ad	bronchial
30	chr4:124324000-124339000	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr4:124324000-124339600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr4:124324200-124329600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr4:124324400-124328000	Weak transcription	Left Ventricle	heart
34	chr4:124324400-124328200	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr4:124324400-124334200	Weak transcription	Spleen	Spleen
36	chr4:124324400-124337200	Weak transcription	Ovary	ovary
37	chr4:124324600-124326800	Active TSS	Primary T helper cells PMA-I stimulated	--
38	chr4:124324600-124326800	Enhancers	Fetal Intestine Small	intestine
39	chr4:124324600-124326800	Active TSS	Psoas Muscle	Psoas
40	chr4:124324600-124328000	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr4:124324600-124328000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr4:124324600-124328200	Weak transcription	Right Ventricle	heart
43	chr4:124324600-124329000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr4:124324600-124332800	Weak transcription	Primary B cells from cord blood	blood
45	chr4:124324600-124332800	Weak transcription	Primary B cells from peripheral blood	blood
46	chr4:124324600-124333200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr4:124324600-124333200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr4:124324600-124333200	Weak transcription	Thymus	Thymus
49	chr4:124324600-124333200	Weak transcription	HSMMtube	muscle
50	chr4:124324600-124334000	Weak transcription	Aorta	Aorta

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