Variant report

Variant	rs4833959
Chromosome Location	chr4:124874366-124874367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:124861115..124863885-chr4:124872326..124874671,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10010854	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10034152	0.92[ASN][1000 genomes]
rs1022373	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11098725	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11098727	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11732946	0.92[ASN][1000 genomes]
rs12642448	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12648267	0.85[ASN][1000 genomes]
rs13112742	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13127429	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13130396	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519236	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519242	0.92[ASN][1000 genomes]
rs2390608	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2390609	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2390616	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34040769	0.93[ASN][1000 genomes]
rs34845433	0.85[ASN][1000 genomes]
rs35633695	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55922840	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56145570	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62321850	0.85[ASN][1000 genomes]
rs67119331	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6813913	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6819474	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7691280	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34581	chr4:124271321-125247395	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv830049	chr4:124793932-124955708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv879875	chr4:124821888-124904592	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv879876	chr4:124847477-124908231	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv879877	chr4:124847477-124935698	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv879878	chr4:124850901-124935698	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:124873000-124875800	Enhancers	HSMM	muscle
2	chr4:124873200-124874600	Enhancers	HSMMtube	muscle
3	chr4:124873200-124875400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:124873400-124875800	Enhancers	Fetal Muscle Leg	muscle
5	chr4:124873600-124875000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:124873600-124875000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr4:124873600-124875000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:124873600-124875000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:124873800-124874800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:124873800-124874800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr4:124873800-124875000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr4:124873800-124875000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr4:124873800-124875000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr4:124874000-124874400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:124874000-124874400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:124874000-124874800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr4:124874000-124875000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:124874000-124875200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr4:124874200-124874400	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr4:124874200-124874400	Flanking Active TSS	NHDF-Ad	bronchial
21	chr4:124874200-124875000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr4:124874200-124875600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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