Variant report

Variant	rs4834710
Chromosome Location	chr4:119791446-119791447
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119789786..119793588-chr4:119801380..119805065,3	MCF-7	breast:
2	chr4:119764467..119766510-chr4:119790526..119793224,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1019696	0.80[CEU][hapmap]
rs11098453	0.80[CEU][hapmap]
rs11098459	0.80[ASN][1000 genomes]
rs11098460	0.80[ASN][1000 genomes]
rs12512594	0.80[ASN][1000 genomes]
rs13139244	0.80[CEU][hapmap]
rs1365550	0.80[CHB][hapmap];0.87[JPT][hapmap]
rs1365551	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs2114461	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3775839	0.80[CEU][hapmap]
rs3885192	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4833592	0.81[JPT][hapmap]
rs4833593	0.80[CEU][hapmap]
rs4834706	0.80[CEU][hapmap]
rs6836897	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119786800-119793200	Weak transcription	NHEK	skin
2	chr4:119790600-119791600	Enhancers	HUVEC	blood vessel
3	chr4:119790600-119792000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:119790600-119792000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:119790600-119792000	Enhancers	Fetal Muscle Leg	muscle
6	chr4:119790600-119792200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:119790600-119792400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr4:119790800-119791600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr4:119790800-119791600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr4:119790800-119791600	Enhancers	Colon Smooth Muscle	Colon
11	chr4:119790800-119791600	Enhancers	NHDF-Ad	bronchial
12	chr4:119790800-119792000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:119790800-119792000	Enhancers	Fetal Stomach	stomach
14	chr4:119790800-119792200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr4:119791000-119791600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr4:119791000-119791600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:119791000-119791600	Enhancers	Rectal Smooth Muscle	rectum
18	chr4:119791000-119791600	Enhancers	HSMM	muscle
19	chr4:119791000-119791800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr4:119791000-119791800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:119791000-119792000	Enhancers	H1 Cell Line	embryonic stem cell
22	chr4:119791000-119792200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr4:119791200-119791600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:119791200-119791600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr4:119791200-119791600	Enhancers	Right Atrium	heart
26	chr4:119791200-119791800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr4:119791200-119791800	Enhancers	Adipose Nuclei	Adipose
28	chr4:119791200-119792400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr4:119791200-119794400	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr4:119791400-119791600	Active TSS	Stomach Smooth Muscle	stomach
31	chr4:119791400-119803000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr4:119791400-119809800	Weak transcription	Left Ventricle	heart

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