Variant report

Variant	rs4834834
Chromosome Location	chr4:120978603-120978604
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:120970922..120972689-chr4:120977467..120980264,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10010446	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11727480	0.82[CHB][hapmap]
rs11942060	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12711084	0.85[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13112411	0.81[CHB][hapmap]
rs13121806	0.91[CHB][hapmap]
rs1972014	0.91[CHB][hapmap];0.88[ASN][1000 genomes]
rs28538838	0.88[ASN][1000 genomes]
rs2892890	0.91[CHB][hapmap]
rs2904883	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2904884	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2908990	0.87[ASN][1000 genomes]
rs2934379	0.91[CHB][hapmap];0.88[ASN][1000 genomes]
rs3113988	0.82[CHB][hapmap]
rs903147	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs972311	0.91[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv879851	chr4:120942372-120984077	Genic enhancers Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120962200-120987200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:120970000-120979600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:120971000-120983200	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr4:120971000-120987400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:120971200-120979400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:120971200-120979600	Weak transcription	HUVEC	blood vessel
7	chr4:120971200-120980200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:120971200-120980800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:120971200-120980800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr4:120971200-120981400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:120971200-120983200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:120971200-120985200	Weak transcription	Fetal Kidney	kidney
13	chr4:120971200-120985600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr4:120971200-120986400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr4:120971200-120986400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr4:120971200-120986800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr4:120971200-120987200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:120971200-120987200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr4:120971200-120987400	Weak transcription	Left Ventricle	heart
20	chr4:120973400-120979400	Weak transcription	HMEC	breast
21	chr4:120973600-120979600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr4:120973800-120980600	Weak transcription	HSMM	muscle
23	chr4:120974200-120984000	Weak transcription	Brain Germinal Matrix	brain
24	chr4:120974400-120983200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr4:120974800-120980400	Weak transcription	NH-A	brain
26	chr4:120974800-120980600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:120974800-120983600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr4:120974800-120983800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr4:120974800-120984000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr4:120974800-120984000	Weak transcription	NHLF	lung
31	chr4:120974800-120985200	Weak transcription	NHEK	skin
32	chr4:120975000-120979400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr4:120975000-120979400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr4:120975000-120980600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr4:120975000-120981200	Weak transcription	Osteobl	bone
36	chr4:120975000-120983400	Weak transcription	NHDF-Ad	bronchial
37	chr4:120975000-120984000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr4:120975000-120985400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr4:120975000-120985400	Weak transcription	Fetal Stomach	stomach
40	chr4:120975000-120985600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr4:120975400-120979400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr4:120975400-120984200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr4:120975400-120986800	Weak transcription	Primary B cells from cord blood	blood
44	chr4:120975600-120981400	Strong transcription	Dnd41	blood
45	chr4:120975600-120984800	Strong transcription	Fetal Thymus	thymus
46	chr4:120975800-120979200	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr4:120975800-120985400	Weak transcription	Primary T cells from cord blood	blood
48	chr4:120975800-120986800	Weak transcription	Primary B cells from peripheral blood	blood
49	chr4:120976000-120980400	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr4:120976200-120985200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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