Variant report

Variant	rs4835107
Chromosome Location	chr4:148824062-148824063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1036441	0.93[AFR][1000 genomes]
rs11725005	0.86[AFR][1000 genomes]
rs13147854	0.81[AFR][1000 genomes]
rs4835104	0.80[AFR][1000 genomes]
rs4835105	0.81[AFR][1000 genomes]
rs4835108	0.86[AFR][1000 genomes]
rs4835467	0.80[AFR][1000 genomes]
rs6851336	0.81[AFR][1000 genomes]
rs7661267	0.80[AFR][1000 genomes]
rs7687859	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv880243	chr4:148735644-148879583	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv880244	chr4:148764252-148920089	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1029845	chr4:148766290-148916437	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1030001	chr4:148773479-148916437	Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1017904	chr4:148814133-148975348	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148786000-148861400	Weak transcription	Pancreas	Pancrea
2	chr4:148794800-148824600	Weak transcription	A549	lung
3	chr4:148796800-148863200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr4:148796800-148866000	Weak transcription	Thymus	Thymus
5	chr4:148797000-148834200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr4:148797000-148835800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr4:148797400-148879600	Weak transcription	Gastric	stomach
8	chr4:148797600-148824600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr4:148801800-148830200	Weak transcription	NHEK	skin
10	chr4:148804600-148854400	Weak transcription	Psoas Muscle	Psoas
11	chr4:148805200-148824200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:148806200-148824200	Weak transcription	HSMMtube	muscle
13	chr4:148806400-148824200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:148806600-148824200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:148809200-148824200	Weak transcription	Lung	lung
16	chr4:148810200-148824800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr4:148810400-148824200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr4:148810600-148829800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr4:148813600-148824600	Weak transcription	Fetal Kidney	kidney
20	chr4:148813600-148827400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr4:148815600-148827200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:148816000-148824200	Weak transcription	Adipose Nuclei	Adipose
23	chr4:148817000-148824200	Weak transcription	Fetal Intestine Small	intestine
24	chr4:148817000-148827600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr4:148817200-148824200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr4:148820400-148824200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr4:148820600-148824200	Weak transcription	Right Ventricle	heart
28	chr4:148820600-148833400	Weak transcription	Left Ventricle	heart
29	chr4:148820600-148861200	Weak transcription	Esophagus	oesophagus
30	chr4:148820800-148848800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr4:148821400-148824600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr4:148821400-148825000	Weak transcription	Colon Smooth Muscle	Colon
33	chr4:148821600-148824600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr4:148822000-148824200	Weak transcription	Ovary	ovary
35	chr4:148823000-148824200	Strong transcription	Fetal Muscle Leg	muscle
36	chr4:148823200-148824600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr4:148823400-148836600	Weak transcription	Placenta	Placenta
38	chr4:148823600-148824200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr4:148823600-148824200	Weak transcription	NHDF-Ad	bronchial
40	chr4:148823600-148824600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr4:148823600-148824600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr4:148823600-148824600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr4:148823600-148831600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr4:148823600-148833400	Weak transcription	Fetal Stomach	stomach
45	chr4:148823600-148833800	Weak transcription	NHLF	lung
46	chr4:148823600-148834600	Weak transcription	Fetal Intestine Large	intestine
47	chr4:148823800-148824200	Weak transcription	GM12878-XiMat	blood
48	chr4:148823800-148824200	Weak transcription	Osteobl	bone
49	chr4:148824000-148824400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr4:148824000-148824400	Strong transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links