Variant report

Variant	rs4835137
Chromosome Location	chr4:149282145-149282146
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12331046	0.93[AFR][1000 genomes]
rs1512333	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1512336	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2063557	1.00[AFR][1000 genomes]
rs2137332	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57841317	1.00[AMR][1000 genomes]
rs59379699	1.00[AMR][1000 genomes]
rs6825048	0.90[AFR][1000 genomes]
rs72655278	1.00[AMR][1000 genomes]
rs7677409	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs993386	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3584816	chr4:149254670-149293317	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149268200-149288000	Weak transcription	Small Intestine	intestine
2	chr4:149277000-149282600	Weak transcription	Right Atrium	heart
3	chr4:149277000-149291000	Weak transcription	Left Ventricle	heart
4	chr4:149277000-149296800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:149277000-149306800	Weak transcription	Pancreas	Pancrea
6	chr4:149277200-149283800	Weak transcription	Colon Smooth Muscle	Colon
7	chr4:149280200-149283000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr4:149280400-149282200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr4:149280400-149282200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr4:149280400-149282400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr4:149280600-149282800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr4:149280800-149282200	Enhancers	HUVEC	blood vessel
13	chr4:149281200-149282600	Weak transcription	Adipose Nuclei	Adipose
14	chr4:149281200-149282600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr4:149281200-149300800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr4:149281400-149290800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr4:149282000-149282200	Enhancers	Gastric	stomach
18	chr4:149282000-149282200	Enhancers	Psoas Muscle	Psoas
19	chr4:149282000-149282800	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr4:149282000-149282800	Enhancers	Right Ventricle	heart

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