Variant report

Variant	rs4835308
Chromosome Location	chr4:147366551-147366552
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4835298	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461675	chr4:147116864-147768206	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv595651	chr4:147116864-147768206	Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1033640	chr4:147232217-147531881	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv917053	chr4:147265436-147499653	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1023868	chr4:147265443-147531626	Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv537293	chr4:147265443-147531626	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv428453	chr4:147335953-147457115	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147346200-147371400	Weak transcription	Primary B cells from cord blood	blood
2	chr4:147353800-147371000	Weak transcription	GM12878-XiMat	blood
3	chr4:147358400-147366800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:147359800-147370200	Weak transcription	Aorta	Aorta
5	chr4:147360600-147371600	Weak transcription	Primary T cells from cord blood	blood
6	chr4:147361000-147366600	Weak transcription	Adipose Nuclei	Adipose
7	chr4:147361600-147366600	Weak transcription	Left Ventricle	heart
8	chr4:147362200-147366600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr4:147364000-147374400	Weak transcription	Colon Smooth Muscle	Colon
10	chr4:147364200-147367000	Weak transcription	HSMM	muscle
11	chr4:147364400-147370400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr4:147364400-147374200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:147364600-147374800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:147364600-147388000	Weak transcription	NHEK	skin
15	chr4:147364800-147402200	Weak transcription	Thymus	Thymus
16	chr4:147365000-147371600	Weak transcription	NHLF	lung
17	chr4:147365000-147372400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr4:147365000-147374000	Weak transcription	Right Ventricle	heart
19	chr4:147365200-147366600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:147365200-147366800	Weak transcription	Ovary	ovary
21	chr4:147365200-147369000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr4:147365200-147371600	Weak transcription	Spleen	Spleen
23	chr4:147365400-147367000	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr4:147365600-147367000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr4:147365600-147368000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr4:147365600-147371600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr4:147365800-147368200	Weak transcription	Dnd41	blood
28	chr4:147366000-147366600	Weak transcription	Fetal Lung	lung
29	chr4:147366000-147366600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr4:147366000-147366800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr4:147366400-147366600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr4:147366400-147366800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr4:147366400-147367000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
34	chr4:147366400-147367000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr4:147366400-147367000	Strong transcription	Fetal Stomach	stomach
36	chr4:147366400-147367200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr4:147366400-147367200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
38	chr4:147366400-147367200	ZNF genes & repeats	Fetal Intestine Small	intestine
39	chr4:147366400-147367200	Strong transcription	Pancreas	Pancrea
40	chr4:147366400-147367400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr4:147366400-147367400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr4:147366400-147367400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
43	chr4:147366400-147367400	Flanking Active TSS	Liver	Liver
44	chr4:147366400-147367400	ZNF genes & repeats	Fetal Muscle Leg	muscle
45	chr4:147366400-147367400	ZNF genes & repeats	Lung	lung

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