Variant report

Variant	rs4835457
Chromosome Location	chr4:148733764-148733765
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:148604073..148606730-chr4:148732511..148734860,2	MCF-7	breast:
2	chr4:148733267..148735164-chr4:148738519..148740118,2	MCF-7	breast:
3	chr4:148733282..148735800-chr4:148746923..148749259,2	MCF-7	breast:
4	chr4:148652087..148654899-chr4:148732313..148734514,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000071205	Chromatin interaction
ENSG00000164169	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10519917	0.80[CHD][hapmap]
rs2043644	0.81[MEX][hapmap]
rs4835456	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6822971	0.89[CHB][hapmap]
rs6845560	0.88[CHB][hapmap]
rs747097	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7683103	0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148715200-148735200	Weak transcription	Stomach Mucosa	stomach
2	chr4:148716000-148734800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:148721600-148734400	Weak transcription	Fetal Stomach	stomach
4	chr4:148721600-148737200	Weak transcription	Gastric	stomach
5	chr4:148721800-148735200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:148721800-148744200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:148729200-148734800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:148729400-148742200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr4:148730000-148734400	Weak transcription	Osteobl	bone
10	chr4:148730000-148742200	Weak transcription	HSMM	muscle
11	chr4:148730200-148734000	Weak transcription	NHLF	lung
12	chr4:148730200-148734400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:148730200-148734400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:148730200-148734400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:148730200-148734400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:148730200-148737400	Weak transcription	Brain Anterior Caudate	brain
17	chr4:148730400-148734200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr4:148730400-148734400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr4:148730800-148734000	Weak transcription	HSMMtube	muscle
20	chr4:148731000-148733800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr4:148731000-148736200	Weak transcription	Lung	lung
22	chr4:148731000-148736800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr4:148731200-148735000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr4:148731200-148735200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr4:148731600-148735400	Enhancers	Left Ventricle	heart
26	chr4:148732000-148733800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:148732000-148734600	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr4:148732200-148738800	Enhancers	Ovary	ovary
29	chr4:148732400-148734000	Enhancers	Colon Smooth Muscle	Colon
30	chr4:148732400-148738000	Enhancers	Psoas Muscle	Psoas
31	chr4:148732600-148736800	Weak transcription	Spleen	Spleen
32	chr4:148732600-148742200	Weak transcription	GM12878-XiMat	blood
33	chr4:148732600-148744000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr4:148732800-148734600	Weak transcription	NHEK	skin
35	chr4:148732800-148735400	Enhancers	Fetal Heart	heart
36	chr4:148733000-148733800	Enhancers	Stomach Smooth Muscle	stomach
37	chr4:148733000-148735400	Enhancers	Right Atrium	heart
38	chr4:148733000-148739400	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr4:148733200-148735400	Enhancers	Aorta	Aorta
40	chr4:148733200-148736000	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr4:148733200-148736600	Weak transcription	Primary T cells from cord blood	blood
42	chr4:148733200-148742400	Weak transcription	Fetal Intestine Small	intestine
43	chr4:148733400-148735400	Enhancers	Fetal Muscle Leg	muscle
44	chr4:148733400-148735600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr4:148733400-148736200	Enhancers	Adipose Nuclei	Adipose
46	chr4:148733400-148736200	Weak transcription	Right Ventricle	heart
47	chr4:148733400-148736800	Weak transcription	Thymus	Thymus
48	chr4:148733400-148738800	Enhancers	Rectal Smooth Muscle	rectum
49	chr4:148733600-148733800	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr4:148733600-148733800	Enhancers	NHDF-Ad	bronchial

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