Variant report

Variant	rs4835458
Chromosome Location	chr4:148737144-148737145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:148735688..148738679-chr4:148741409..148744100,2	MCF-7	breast:
2	chr4:148731757..148733560-chr4:148736505..148738130,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs6535562	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6535563	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6813714	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6824823	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7660941	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv880243	chr4:148735644-148879583	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148721600-148737200	Weak transcription	Gastric	stomach
2	chr4:148721800-148744200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:148729400-148742200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:148730000-148742200	Weak transcription	HSMM	muscle
5	chr4:148730200-148737400	Weak transcription	Brain Anterior Caudate	brain
6	chr4:148732200-148738800	Enhancers	Ovary	ovary
7	chr4:148732400-148738000	Enhancers	Psoas Muscle	Psoas
8	chr4:148732600-148742200	Weak transcription	GM12878-XiMat	blood
9	chr4:148732600-148744000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:148733000-148739400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr4:148733200-148742400	Weak transcription	Fetal Intestine Small	intestine
12	chr4:148733400-148738800	Enhancers	Rectal Smooth Muscle	rectum
13	chr4:148734000-148742800	Weak transcription	Fetal Lung	lung
14	chr4:148734200-148738000	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr4:148734600-148761000	Weak transcription	Fetal Kidney	kidney
16	chr4:148734800-148742000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr4:148735000-148737400	Weak transcription	Fetal Stomach	stomach
18	chr4:148735000-148739000	Enhancers	Stomach Smooth Muscle	stomach
19	chr4:148735000-148739200	Enhancers	Colon Smooth Muscle	Colon
20	chr4:148735000-148739200	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr4:148735000-148741200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:148735200-148737800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr4:148735400-148737200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr4:148735400-148737200	Weak transcription	Fetal Muscle Leg	muscle
25	chr4:148735400-148737200	Weak transcription	Pancreas	Pancrea
26	chr4:148735400-148739200	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr4:148735400-148742200	Weak transcription	NHLF	lung
28	chr4:148735800-148741400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr4:148735800-148742800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr4:148736200-148737400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr4:148736200-148737400	Enhancers	Esophagus	oesophagus
32	chr4:148736200-148737600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr4:148736200-148737600	Enhancers	Duodenum Mucosa	Duodenum
34	chr4:148736200-148737600	Enhancers	Lung	lung
35	chr4:148736200-148737600	Enhancers	Right Atrium	heart
36	chr4:148736200-148737600	Enhancers	Right Ventricle	heart
37	chr4:148736200-148737800	Enhancers	Primary T cells fromperipheralblood	blood
38	chr4:148736200-148737800	Enhancers	Left Ventricle	heart
39	chr4:148736200-148739200	Enhancers	Aorta	Aorta
40	chr4:148736200-148741200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr4:148736200-148742200	Weak transcription	HSMMtube	muscle
42	chr4:148736400-148737400	Enhancers	HUVEC	blood vessel
43	chr4:148736400-148737600	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr4:148736400-148737600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr4:148736400-148737800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr4:148736400-148737800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr4:148736400-148741200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr4:148736400-148741800	Weak transcription	HMEC	breast
49	chr4:148736400-148742000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr4:148736600-148737600	Enhancers	Primary T cells from cord blood	blood

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