Variant report

Variant	rs4835459
Chromosome Location	chr4:148746961-148746962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:148733282..148735800-chr4:148746923..148749259,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4292310	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73853983	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7670230	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7678505	1.00[JPT][hapmap];0.84[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs893023	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9307843	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv880243	chr4:148735644-148879583	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148734600-148761000	Weak transcription	Fetal Kidney	kidney
2	chr4:148737000-148747200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:148737200-148758200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr4:148737600-148747000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:148737600-148747000	Weak transcription	Gastric	stomach
6	chr4:148737600-148750400	Weak transcription	Lung	lung
7	chr4:148737600-148751000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr4:148737800-148751400	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr4:148737800-148755400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr4:148737800-148757000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:148737800-148782200	Weak transcription	Thymus	Thymus
12	chr4:148738600-148750400	Weak transcription	Placenta	Placenta
13	chr4:148741400-148754000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:148742600-148747000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr4:148742600-148747400	Weak transcription	Spleen	Spleen
16	chr4:148742600-148751000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr4:148743000-148750400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr4:148743200-148782200	Weak transcription	Fetal Intestine Large	intestine
19	chr4:148743400-148747000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr4:148743400-148749400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr4:148743600-148750600	Weak transcription	Fetal Lung	lung
22	chr4:148743600-148752000	Weak transcription	Brain Anterior Caudate	brain
23	chr4:148743600-148752200	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr4:148743600-148755400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr4:148743800-148750400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr4:148743800-148750600	Weak transcription	Small Intestine	intestine
27	chr4:148743800-148750800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr4:148743800-148751000	Weak transcription	Fetal Thymus	thymus
29	chr4:148744000-148747000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr4:148744000-148747000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr4:148744000-148747000	Weak transcription	NHLF	lung
32	chr4:148744000-148747200	Enhancers	HMEC	breast
33	chr4:148744200-148747000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr4:148744200-148747800	Strong transcription	Fetal Stomach	stomach
35	chr4:148744400-148748000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr4:148744400-148750600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr4:148744600-148747000	Weak transcription	Ovary	ovary
38	chr4:148744600-148747000	Weak transcription	GM12878-XiMat	blood
39	chr4:148744800-148747000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr4:148744800-148747000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr4:148744800-148747000	Weak transcription	Rectal Smooth Muscle	rectum
42	chr4:148745600-148747000	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr4:148745600-148747600	Genic enhancers	Stomach Smooth Muscle	stomach
44	chr4:148745800-148747800	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr4:148745800-148747800	Enhancers	Psoas Muscle	Psoas
46	chr4:148746000-148747600	Enhancers	Right Ventricle	heart
47	chr4:148746000-148747800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr4:148746200-148747000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr4:148746200-148747000	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr4:148746200-148747200	Weak transcription	Esophagus	oesophagus

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