Variant report

Variant	rs4835489
Chromosome Location	chr4:149067096-149067097
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr4:149066966-149067494	HL-60	blood:	n/a	chr4:149067234-149067243 chr4:149067231-149067244 chr4:149067232-149067245
2	SPI1	chr4:149067080-149067449	HL-60	blood:	n/a	chr4:149067234-149067243 chr4:149067231-149067244 chr4:149067232-149067245

Variant related genes	Relation type
ENSG00000250354	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11099678	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11736161	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12502713	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4835129	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4835130	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846614	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149018000-149085800	Weak transcription	Stomach Mucosa	stomach
2	chr4:149024000-149068600	Weak transcription	Right Ventricle	heart
3	chr4:149039400-149069400	Weak transcription	Colonic Mucosa	Colon
4	chr4:149040600-149083200	Weak transcription	Gastric	stomach
5	chr4:149041400-149067600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:149041400-149092000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr4:149041600-149069600	Weak transcription	Brain Anterior Caudate	brain
8	chr4:149041800-149074400	Weak transcription	Lung	lung
9	chr4:149045600-149104800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr4:149046400-149076600	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr4:149046400-149085800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:149046600-149075600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr4:149046600-149087400	Weak transcription	Aorta	Aorta
14	chr4:149047000-149077200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr4:149047400-149067200	Weak transcription	Left Ventricle	heart
16	chr4:149047400-149083800	Weak transcription	Small Intestine	intestine
17	chr4:149049400-149083000	Weak transcription	Fetal Intestine Large	intestine
18	chr4:149049600-149072800	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr4:149055000-149073600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr4:149055000-149087400	Weak transcription	Psoas Muscle	Psoas
21	chr4:149055600-149067400	Weak transcription	Brain Hippocampus Middle	brain
22	chr4:149060200-149067400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr4:149060800-149067200	Weak transcription	Esophagus	oesophagus
24	chr4:149061800-149067400	Weak transcription	Fetal Stomach	stomach
25	chr4:149062600-149075600	Weak transcription	Colon Smooth Muscle	Colon
26	chr4:149063000-149076400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr4:149063000-149087400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr4:149063200-149077000	Weak transcription	Primary B cells from peripheral blood	blood
29	chr4:149063200-149085600	Weak transcription	Fetal Intestine Small	intestine
30	chr4:149063400-149072200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr4:149064200-149076200	Weak transcription	Brain Angular Gyrus	brain
32	chr4:149065800-149067600	Strong transcription	Fetal Muscle Leg	muscle
33	chr4:149065800-149068000	Strong transcription	Liver	Liver
34	chr4:149066000-149067600	Strong transcription	Stomach Smooth Muscle	stomach
35	chr4:149066000-149067800	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr4:149066000-149068000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr4:149066000-149069200	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr4:149066000-149069600	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr4:149066400-149067800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr4:149066400-149068000	Strong transcription	Adipose Nuclei	Adipose
41	chr4:149066600-149067200	Weak transcription	Pancreas	Pancrea
42	chr4:149066600-149067800	Strong transcription	Ovary	ovary
43	chr4:149066600-149068000	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr4:149066800-149067800	Strong transcription	Fetal Muscle Trunk	muscle
45	chr4:149066800-149068000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
46	chr4:149067000-149068000	Strong transcription	Skeletal Muscle Male	skeletal muscle
47	chr4:149067000-149068000	Strong transcription	Spleen	Spleen
48	chr4:149067000-149068800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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