Variant report

Variant	rs4835502
Chromosome Location	chr4:149125251-149125252
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr4:149124556-149125304	ECC-1	luminal epithelium:	n/a	n/a
2	TCF12	chr4:149124631-149125324	ECC-1	luminal epithelium:	n/a	n/a
3	EP300	chr4:149124558-149125269	ECC-1	luminal epithelium:	n/a	chr4:149124596-149124610
4	FOXM1	chr4:149124614-149125302	ECC-1	luminal epithelium:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:149120620..149122902-chr4:149123252..149125690,3	K562	blood:
2	chr4:149120620..149122902-chr4:149123483..149125690,2	K562	blood:

Variant related genes	Relation type
NR3C2	TF binding region
ENSG00000151623	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12645409	0.91[ASN][1000 genomes]
rs2883879	0.88[ASN][1000 genomes]
rs3846300	0.80[ASN][1000 genomes]
rs3846306	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4027074	0.92[ASN][1000 genomes]
rs4835497	0.92[ASN][1000 genomes]
rs68104634	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6854045	0.94[ASN][1000 genomes]
rs7670121	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149112400-149137400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr4:149114200-149131400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:149115800-149137400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:149117200-149138000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr4:149117600-149125600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr4:149122800-149126800	Enhancers	Fetal Heart	heart
7	chr4:149123400-149126200	Enhancers	Brain Cingulate Gyrus	brain
8	chr4:149123600-149125400	Weak transcription	Brain Substantia Nigra	brain
9	chr4:149123600-149125600	Enhancers	Brain Anterior Caudate	brain
10	chr4:149123600-149125600	Enhancers	Colon Smooth Muscle	Colon
11	chr4:149123600-149126000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr4:149123600-149126400	Enhancers	Fetal Kidney	kidney
13	chr4:149123600-149150200	Weak transcription	Right Ventricle	heart
14	chr4:149124000-149125600	Weak transcription	Brain Hippocampus Middle	brain
15	chr4:149124000-149131600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr4:149124000-149133200	Weak transcription	Left Ventricle	heart
17	chr4:149124000-149133400	Weak transcription	Pancreas	Pancrea
18	chr4:149124000-149136400	Weak transcription	Brain Angular Gyrus	brain
19	chr4:149124200-149125600	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr4:149124200-149126400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr4:149124600-149125400	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr4:149124800-149125400	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr4:149124800-149125600	Enhancers	Fetal Intestine Large	intestine
24	chr4:149124800-149126000	Enhancers	Adipose Nuclei	Adipose
25	chr4:149124800-149126000	Weak transcription	Fetal Muscle Leg	muscle
26	chr4:149125000-149125600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr4:149125000-149125600	Enhancers	Duodenum Mucosa	Duodenum
28	chr4:149125000-149125600	Enhancers	Fetal Intestine Small	intestine
29	chr4:149125000-149125600	Enhancers	HSMMtube	muscle
30	chr4:149125000-149126200	Enhancers	Liver	Liver
31	chr4:149125000-149126200	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr4:149125000-149132800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr4:149125000-149133400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr4:149125000-149135600	Weak transcription	Ovary	ovary
35	chr4:149125200-149125800	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr4:149125200-149126200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr4:149125200-149126400	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr4:149125200-149130400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr4:149125200-149132800	Weak transcription	Aorta	Aorta
40	chr4:149125200-149136000	Weak transcription	Psoas Muscle	Psoas

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