Variant report

Variant	rs4835621
Chromosome Location	chr4:151094182-151094183
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12501888	1.00[CEU][hapmap]
rs12513356	1.00[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs4240358	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4254749	0.89[ASN][1000 genomes]
rs4292314	0.94[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs4320118	0.89[ASN][1000 genomes]
rs58654970	0.81[EUR][1000 genomes]
rs72617457	0.81[EUR][1000 genomes]
rs7679888	0.80[CHB][hapmap];1.00[YRI][hapmap]
rs7692551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151045200-151099000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:151074400-151094200	Weak transcription	NH-A	brain
3	chr4:151074600-151094600	Weak transcription	HSMM	muscle
4	chr4:151081400-151094200	Weak transcription	Fetal Muscle Leg	muscle
5	chr4:151081400-151096600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr4:151085400-151094200	Enhancers	Brain Germinal Matrix	brain
7	chr4:151085400-151097400	Weak transcription	Ovary	ovary
8	chr4:151087200-151094600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:151088600-151094400	Weak transcription	Right Atrium	heart
10	chr4:151088800-151094200	Weak transcription	Fetal Brain Male	brain
11	chr4:151088800-151094200	Weak transcription	Fetal Lung	lung
12	chr4:151088800-151094200	Weak transcription	Left Ventricle	heart
13	chr4:151088800-151094200	Weak transcription	Right Ventricle	heart
14	chr4:151089000-151094200	Weak transcription	Brain Hippocampus Middle	brain
15	chr4:151089000-151094200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:151089000-151094200	Weak transcription	Lung	lung
17	chr4:151089200-151094200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr4:151089200-151097000	Weak transcription	Aorta	Aorta
19	chr4:151090600-151094200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:151091600-151104800	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr4:151092000-151097000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr4:151092200-151094200	Weak transcription	Osteobl	bone
23	chr4:151092200-151094400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:151092200-151094600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr4:151092200-151096800	Weak transcription	NHDF-Ad	bronchial
26	chr4:151092600-151094200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr4:151093000-151096800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr4:151093600-151094200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr4:151093600-151094200	Weak transcription	Spleen	Spleen
30	chr4:151093800-151094200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr4:151094000-151094400	Enhancers	Fetal Brain Female	brain
32	chr4:151094000-151095000	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr4:151094000-151095000	Enhancers	HUVEC	blood vessel
34	chr4:151094000-151095200	Enhancers	Brain Anterior Caudate	brain
35	chr4:151094000-151095400	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr4:151094000-151095400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr4:151094000-151095400	Enhancers	Fetal Heart	heart
38	chr4:151094000-151095400	Enhancers	Fetal Stomach	stomach
39	chr4:151094000-151095600	Enhancers	Brain Angular Gyrus	brain
40	chr4:151094000-151095600	Enhancers	A549	lung
41	chr4:151094000-151095800	Enhancers	HSMMtube	muscle

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