Variant report

Variant	rs4836400
Chromosome Location	chr5:128100158-128100159
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10042834	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10045824	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10075245	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11741074	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12719381	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1833666	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2191083	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2215239	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4836396	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4836398	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4836401	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4836403	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4836404	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4836406	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6595858	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7734900	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882836	chr5:127999225-128136519	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128098600-128102400	Enhancers	Fetal Stomach	stomach
2	chr5:128098800-128101800	Enhancers	Fetal Muscle Leg	muscle
3	chr5:128099000-128101400	Enhancers	Fetal Lung	lung
4	chr5:128100000-128100800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:128100000-128100800	Enhancers	Adipose Nuclei	Adipose
6	chr5:128100000-128101400	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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