Variant report

Variant	rs483769
Chromosome Location	chr11:34849573-34849574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72920721	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs483769	APIP	cis	lung	GTEx
rs483769	APIP	cis	cerebellum	SCAN
rs483769	APIP	cis	Skin Sun Exposed Lower leg	GTEx
rs483769	APIP	cis	Esophagus Muscularis	GTEx

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34847000-34852000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:34847200-34858400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:34847400-34852200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:34847600-34851600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:34847600-34851600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:34847600-34852000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:34847800-34851800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:34848000-34849600	Enhancers	HepG2	liver
9	chr11:34848200-34854400	Weak transcription	Esophagus	oesophagus
10	chr11:34848800-34851400	Weak transcription	K562	blood
11	chr11:34848800-34851600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:34849000-34849600	Enhancers	Fetal Intestine Large	intestine
13	chr11:34849200-34849600	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr11:34849400-34851400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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