Variant report

Variant	rs4838426
Chromosome Location	chr10:49783204-49783205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49781506..49783468-chr10:49787135..49789633,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1015921	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10458722	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10458723	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10458724	0.88[ASN][1000 genomes]
rs10458725	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10458726	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10491041	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10491042	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10776618	0.88[ASN][1000 genomes]
rs10776619	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10776620	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10776621	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10776622	0.87[AFR][1000 genomes]
rs10857599	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10857600	0.87[AFR][1000 genomes]
rs10857601	0.84[AFR][1000 genomes]
rs10857603	0.87[AFR][1000 genomes]
rs11101385	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11101387	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11599380	0.87[AFR][1000 genomes]
rs1373791	0.87[AFR][1000 genomes]
rs1373795	0.87[AFR][1000 genomes]
rs1445166	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1579818	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1814478	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1822863	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1838576	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1867588	0.87[AFR][1000 genomes]
rs1867589	0.88[ASN][1000 genomes]
rs1900023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2014513	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2120905	0.88[ASN][1000 genomes]
rs2166225	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2166227	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3853764	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3853766	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3867454	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3867455	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3905490	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3925980	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3954086	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4101281	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4838626	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4989810	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4989811	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61211884	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7068812	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7078307	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7085475	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7358030	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7358032	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7358134	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7358135	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs749377	0.90[ASN][1000 genomes]
rs7911176	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7919818	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs935295	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs935296	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs935297	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv550815	chr10:49774633-49794481	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv550816	chr10:49782417-49794481	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49773000-49787400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr10:49773200-49787800	Weak transcription	Brain Angular Gyrus	brain
3	chr10:49773400-49786200	Weak transcription	Brain Hippocampus Middle	brain
4	chr10:49773400-49786600	Strong transcription	HSMM	muscle
5	chr10:49776400-49786200	Weak transcription	Brain Substantia Nigra	brain
6	chr10:49777000-49787400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:49777400-49787400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:49778800-49783800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr10:49779200-49784400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:49779400-49788000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr10:49780200-49783600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:49780200-49783800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:49780800-49787200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:49781200-49786000	Strong transcription	Osteobl	bone
15	chr10:49781200-49786200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:49781200-49786800	Strong transcription	NH-A	brain
17	chr10:49781200-49787000	Strong transcription	Muscle Satellite Cultured Cells	--
18	chr10:49781600-49783800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:49782200-49786200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:49782400-49783800	Strong transcription	NHDF-Ad	bronchial
21	chr10:49782400-49784200	Strong transcription	NHLF	lung
22	chr10:49782600-49783400	Enhancers	Placenta	Placenta
23	chr10:49782600-49783800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr10:49782600-49784400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:49782800-49786200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr10:49782800-49787400	Weak transcription	Fetal Thymus	thymus
27	chr10:49782800-49790200	Weak transcription	Aorta	Aorta
28	chr10:49783000-49784000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr10:49783000-49786800	Weak transcription	HSMMtube	muscle
30	chr10:49783000-49787200	Weak transcription	HMEC	breast
31	chr10:49783000-49787400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr10:49783000-49788400	Enhancers	Primary B cells from cord blood	blood
33	chr10:49783200-49783400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:49783200-49783600	Weak transcription	HUVEC	blood vessel
35	chr10:49783200-49783600	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr10:49783200-49783800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr10:49783200-49787000	Enhancers	GM12878-XiMat	blood
38	chr10:49783200-49787800	Enhancers	Primary B cells from peripheral blood	blood
39	chr10:49783200-49787800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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