Variant report

Variant	rs4839232
Chromosome Location	chr1:112810108-112810109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:112803413..112805956-chr1:112808541..112810766,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2998332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2998334	1.00[AMR][1000 genomes]
rs3128363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv13370	chr1:112693290-113246263	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:112788800-112812200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:112806800-112811000	Weak transcription	K562	blood
3	chr1:112807200-112810800	Weak transcription	Osteobl	bone
4	chr1:112807400-112810200	Weak transcription	HSMM	muscle
5	chr1:112807600-112810200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:112807800-112810200	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:112807800-112811800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:112808000-112810200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:112808200-112810600	Weak transcription	Placenta	Placenta
10	chr1:112808200-112815200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr1:112808400-112810200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr1:112808600-112810200	Weak transcription	Adipose Nuclei	Adipose
13	chr1:112808600-112810200	Weak transcription	Fetal Stomach	stomach
14	chr1:112808600-112810800	Weak transcription	Brain Substantia Nigra	brain
15	chr1:112809400-112811200	Enhancers	Pancreas	Pancrea
16	chr1:112809400-112811600	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr1:112809600-112810200	Weak transcription	Left Ventricle	heart
18	chr1:112809600-112810200	Weak transcription	Lung	lung
19	chr1:112809800-112811400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr1:112809800-112811400	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr1:112810000-112810200	Enhancers	Brain Angular Gyrus	brain
22	chr1:112810000-112810400	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr1:112810000-112811000	Enhancers	Stomach Smooth Muscle	stomach
24	chr1:112810000-112811200	Enhancers	Fetal Muscle Leg	muscle
25	chr1:112810000-112811400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr1:112810000-112811400	Enhancers	Right Atrium	heart
27	chr1:112810000-112811400	Enhancers	HSMMtube	muscle
28	chr1:112810000-112811600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr1:112810000-112811600	Enhancers	Ovary	ovary

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