Variant report

Variant	rs4841561
Chromosome Location	chr8:11418773-11418774
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PML	chr8:11417767-11418857	GM12878	blood:	n/a	n/a
2	BCLAF1	chr8:11418072-11419043	GM12878	blood:	n/a	chr8:11418397-11418405 chr8:11418702-11418710
3	POLR2A	chr8:11417571-11419097	GM12878	blood:	n/a	n/a
4	NFATC1	chr8:11417743-11419129	GM12878	blood:	n/a	n/a
5	BCL3	chr8:11418521-11418953	GM12878	blood:	n/a	chr8:11418702-11418710
6	ATF2	chr8:11418701-11418997	GM12878	blood:	n/a	n/a
7	POLR2A	chr8:11417675-11419160	GM12891	blood:	n/a	n/a
8	POLR2A	chr8:11417509-11419337	GM12878	blood:	n/a	n/a
9	POLR2A	chr8:11417490-11419099	GM12891	blood:	n/a	n/a
10	MTA3	chr8:11417765-11419222	GM12878	blood:	n/a	n/a
11	STAT5A	chr8:11415838-11419365	GM12878	blood:	n/a	chr8:11417392-11417400 chr8:11417392-11417401 chr8:11416737-11416745 chr8:11416410-11416422 chr8:11417391-11417400
12	POLR2A	chr8:11415079-11419236	GM12892	blood:	n/a	n/a
13	POLR2A	chr8:11412687-11419386	GM12878	blood:	n/a	n/a
14	POLR2A	chr8:11417857-11419161	GM18505	blood:	n/a	n/a
15	POLR2A	chr8:11417619-11419240	GM12892	blood:	n/a	n/a
16	POLR2A	chr8:11414547-11419114	GM12878	blood:	n/a	n/a
17	STAT5A	chr8:11417746-11418951	GM12878	blood:	n/a	n/a
18	POLR2A	chr8:11417519-11419065	GM12878	blood:	n/a	n/a
19	POLR2A	chr8:11417801-11419207	GM12878	blood:	n/a	n/a
20	POLR2A	chr8:11408969-11419349	GM12878	blood:	n/a	n/a
21	POLR2A	chr8:11417706-11419304	GM12892	blood:	n/a	n/a
22	NFATC1	chr8:11417857-11418868	GM12878	blood:	n/a	n/a
23	POLR2A	chr8:11417555-11419078	GM12878	blood:	n/a	n/a
24	POLR2A	chr8:11417675-11418974	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:11410226..11416148-chr8:11417699..11422629,5	K562	blood:
2	chr8:11418474..11420140-chr8:11572245..11574135,2	K562	blood:

Variant related genes	Relation type
ENSG00000255518	TF binding region
ENSG00000255354	TF binding region
ENSG00000255518	Chromatin interaction
ENSG00000269954	Chromatin interaction
ENSG00000254774	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10097005	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10097015	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10098782	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10109802	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1042689	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11250148	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11786148	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12541802	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12547947	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13248757	0.81[AMR][1000 genomes]
rs13262953	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2250986	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2279169	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2898289	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34379689	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35067819	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35401006	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4841557	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4841558	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4841562	0.82[EUR][1000 genomes]
rs4841563	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6988443	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7007439	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7011778	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7814414	0.86[EUR][1000 genomes]
rs7834638	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840433	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	esv34097	chr8:11177372-11489894	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1017865	chr8:11377795-11579954	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv520117	chr8:11391650-11429147	Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv465466	chr8:11391650-11429147	Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv610289	chr8:11391650-11429147	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv465467	chr8:11391650-11430485	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv610290	chr8:11391650-11430485	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	esv2761407	chr8:11392880-11429147	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv1029589	chr8:11392880-11429147	ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv1026837	chr8:11394466-11464127	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	nsv1018959	chr8:11395232-11455756	Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	nsv890358	chr8:11396856-11448738	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
16	nsv1033629	chr8:11401789-11466745	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
17	nsv523827	chr8:11408401-11486220	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4841561	C8orf5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11404800-11421800	Genic enhancers	Primary B cells from peripheral blood	blood
2	chr8:11410400-11419600	Enhancers	Fetal Thymus	thymus
3	chr8:11416200-11421600	Weak transcription	Spleen	Spleen
4	chr8:11417000-11419800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:11417000-11421000	Strong transcription	GM12878-XiMat	blood
6	chr8:11417000-11421600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr8:11417200-11420000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:11418000-11419200	Enhancers	Primary hematopoietic stem cells	blood
9	chr8:11418200-11421200	Weak transcription	Primary B cells from cord blood	blood
10	chr8:11418400-11418800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:11418400-11420800	Strong transcription	Dnd41	blood
12	chr8:11418600-11419200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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