Variant report

Variant	rs4841584
Chromosome Location	chr8:11601510-11601511
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:11595827..11599047-chr8:11599477..11602717,3	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10503425	1.00[ASN][1000 genomes]
rs1065712	0.90[CEU][hapmap];1.00[ASN][1000 genomes]
rs17153500	1.00[ASN][1000 genomes]
rs17153747	1.00[ASN][1000 genomes]
rs17153752	1.00[ASN][1000 genomes]
rs17153785	1.00[CEU][hapmap]
rs17810696	1.00[ASN][1000 genomes]
rs17810775	1.00[ASN][1000 genomes]
rs2645398	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2645444	1.00[ASN][1000 genomes]
rs2686188	1.00[ASN][1000 genomes]
rs2740431	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs28628715	1.00[ASN][1000 genomes]
rs28709984	1.00[ASN][1000 genomes]
rs3729853	1.00[ASN][1000 genomes]
rs3729856	1.00[ASN][1000 genomes]
rs4124646	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs4840582	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs4840584	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs4840585	0.83[CEU][hapmap];1.00[ASN][1000 genomes]
rs4841585	1.00[ASN][1000 genomes]
rs4841586	1.00[ASN][1000 genomes]
rs4841593	1.00[ASN][1000 genomes]
rs55650299	1.00[ASN][1000 genomes]
rs55658394	1.00[ASN][1000 genomes]
rs55757177	1.00[ASN][1000 genomes]
rs55848834	1.00[ASN][1000 genomes]
rs55877487	1.00[ASN][1000 genomes]
rs56043655	1.00[ASN][1000 genomes]
rs56187811	1.00[ASN][1000 genomes]
rs56213203	1.00[ASN][1000 genomes]
rs56303605	1.00[ASN][1000 genomes]
rs66535756	1.00[ASN][1000 genomes]
rs7010927	1.00[ASN][1000 genomes]
rs73205195	1.00[ASN][1000 genomes]
rs73207235	1.00[ASN][1000 genomes]
rs73207239	1.00[ASN][1000 genomes]
rs73207245	1.00[ASN][1000 genomes]
rs73207246	1.00[ASN][1000 genomes]
rs8191513	1.00[ASN][1000 genomes]
rs8191538	1.00[ASN][1000 genomes]
rs8191556	1.00[ASN][1000 genomes]
rs8191558	1.00[ASN][1000 genomes]
rs8191560	1.00[ASN][1000 genomes]
rs8191605	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs8191606	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs8191607	0.90[CEU][hapmap];1.00[ASN][1000 genomes]
rs8191608	1.00[ASN][1000 genomes]
rs8191617	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs8191625	1.00[ASN][1000 genomes]
rs8191676	1.00[ASN][1000 genomes]
rs904006	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv1018978	chr8:11438267-11858466	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv917963	chr8:11540723-11751798	Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1027378	chr8:11541739-11858466	Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1028229	chr8:11575762-11805961	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv539475	chr8:11575762-11805961	Flanking Active TSS Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv428514	chr8:11580381-11765706	Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
8	nsv916483	chr8:11590294-11672038	Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv890359	chr8:11599570-11617240	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11596200-11604000	Enhancers	Pancreas	Pancrea
2	chr8:11598400-11604200	Enhancers	Stomach Mucosa	stomach
3	chr8:11599200-11602000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:11599200-11602000	Flanking Active TSS	Ovary	ovary
5	chr8:11599200-11602400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
6	chr8:11599200-11602600	Enhancers	Duodenum Mucosa	Duodenum
7	chr8:11599200-11605000	Enhancers	Left Ventricle	heart
8	chr8:11599400-11602000	Bivalent Enhancer	Fetal Stomach	stomach
9	chr8:11599400-11602000	Enhancers	Rectal Smooth Muscle	rectum
10	chr8:11600200-11602000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:11600200-11602200	Enhancers	HepG2	liver
12	chr8:11600200-11602400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr8:11600600-11601600	Bivalent Enhancer	Stomach Smooth Muscle	stomach
14	chr8:11600600-11602000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr8:11600600-11602400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr8:11600600-11602400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:11600600-11602400	Enhancers	Colon Smooth Muscle	Colon
18	chr8:11600600-11602400	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
19	chr8:11600600-11602800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
20	chr8:11601000-11601600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr8:11601000-11601600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
22	chr8:11601000-11601800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
23	chr8:11601000-11602000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr8:11601000-11602000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr8:11601000-11602000	Enhancers	Placenta	Placenta
26	chr8:11601000-11602200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
27	chr8:11601200-11601800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
28	chr8:11601200-11602000	Enhancers	Gastric	stomach
29	chr8:11601200-11603800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr8:11601200-11604800	Enhancers	Liver	Liver
31	chr8:11601400-11602200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
32	chr8:11601400-11602400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
33	chr8:11601400-11602400	Flanking Active TSS	Fetal Heart	heart
34	chr8:11601400-11602400	Enhancers	Right Ventricle	heart
35	chr8:11601400-11602600	Enhancers	Fetal Intestine Small	intestine
36	chr8:11601400-11603000	Enhancers	Right Atrium	heart

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