Variant report

Variant	rs4843141
Chromosome Location	chr15:83580201-83580202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1037403	0.95[JPT][hapmap]
rs11259960	1.00[JPT][hapmap]
rs12050725	1.00[JPT][hapmap]
rs12148275	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs12441675	1.00[JPT][hapmap]
rs12441914	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1568657	0.89[JPT][hapmap]
rs2046070	0.94[JPT][hapmap]
rs2061947	1.00[JPT][hapmap]
rs2123157	0.94[JPT][hapmap]
rs2167602	0.94[JPT][hapmap]
rs4842935	0.94[JPT][hapmap]
rs4843144	0.92[CEU][hapmap];0.82[CHB][hapmap];0.80[JPT][hapmap]
rs4843146	0.93[JPT][hapmap]
rs6603041	0.94[JPT][hapmap]
rs7171095	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8043020	0.94[JPT][hapmap]
rs872598	0.94[JPT][hapmap]
rs872599	0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83568200-83585400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr15:83570400-83591600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:83573600-83582000	Weak transcription	Psoas Muscle	Psoas
4	chr15:83578000-83585200	Weak transcription	Left Ventricle	heart
5	chr15:83579000-83580400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:83579200-83580400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:83579600-83580400	Enhancers	Fetal Heart	heart
8	chr15:83579800-83581400	Weak transcription	Pancreas	Pancrea
9	chr15:83580000-83581600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr15:83580200-83581400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr15:83580200-83581600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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