Variant report

Variant	rs4845629
Chromosome Location	chr1:151831438-151831439
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:151831226..151832887-chr1:151834342..151836326,2	MCF-7	breast:
2	chr1:151828500..151832022-chr1:151833324..151837098,3	K562	blood:
3	chr1:151819170..151821882-chr1:151830861..151833145,2	K562	blood:
4	chr1:151823384..151829926-chr1:151830365..151837191,11	MCF-7	breast:
5	chr1:151831282..151833354-chr1:151964216..151966814,2	K562	blood:
6	chr1:151822836..151827671-chr1:151828332..151832187,5	K562	blood:
7	chr1:151817401..151820382-chr1:151830495..151832320,2	MCF-7	breast:
8	chr1:151825580..151827671-chr1:151828953..151832187,3	K562	blood:
9	chr1:151818078..151821727-chr1:151829199..151833455,4	MCF-7	breast:
10	chr1:151821929..151826041-chr1:151829913..151833427,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000196407	Chromatin interaction
ENSG00000197747	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16833612	0.83[ASN][1000 genomes]
rs16833667	0.83[ASN][1000 genomes]
rs17643668	1.00[CEU][hapmap];1.00[MEX][hapmap];0.84[EUR][1000 genomes]
rs2087551	0.83[ASN][1000 genomes]
rs4845375	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4845628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008033	chr1:151785029-151843154	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151819200-151847600	Weak transcription	Thymus	Thymus
2	chr1:151821400-151832400	Weak transcription	Spleen	Spleen
3	chr1:151821600-151845600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr1:151826400-151846200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr1:151827600-151839800	Weak transcription	Hela-S3	cervix
6	chr1:151828200-151835400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr1:151828800-151837000	Weak transcription	Right Ventricle	heart
8	chr1:151829000-151845200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:151829200-151832000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr1:151829400-151834200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr1:151829800-151832800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:151829800-151832800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:151830000-151833400	Enhancers	HMEC	breast
14	chr1:151830000-151833600	Enhancers	NHEK	skin
15	chr1:151830000-151833800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:151830400-151831600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:151830600-151831600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr1:151830600-151831800	Enhancers	HUVEC	blood vessel
19	chr1:151830600-151831800	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr1:151830600-151832000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr1:151830600-151832200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:151830600-151832200	Weak transcription	Fetal Thymus	thymus
23	chr1:151830600-151834400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr1:151831000-151832400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr1:151831000-151834000	Enhancers	Esophagus	oesophagus
26	chr1:151831000-151881400	Weak transcription	Ovary	ovary
27	chr1:151831200-151831800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
28	chr1:151831200-151835000	Enhancers	Placenta	Placenta
29	chr1:151831400-151831800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell

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