Variant report

Variant	rs4845656
Chromosome Location	chr1:154601937-154601938
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:46)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:46 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:154601709-154601970	K562	blood:	n/a	n/a
2	MAZ	chr1:154601677-154602046	K562	blood:	n/a	n/a
3	MYC	chr1:154601515-154602037	K562	blood:	n/a	n/a
4	MAX	chr1:154601586-154601984	K562	blood:	n/a	n/a
5	POLR2A	chr1:154601741-154601954	K562	blood:	n/a	n/a
6	ATF1	chr1:154601641-154602134	K562	blood:	n/a	n/a
7	SETDB1	chr1:154601578-154602971	K562	blood:	n/a	n/a
8	TBL1XR1	chr1:154601384-154602164	K562	blood:	n/a	n/a
9	GATA1	chr1:154598852-154602355	K562	blood:	n/a	n/a
10	CCNT2	chr1:154601539-154602117	K562	blood:	n/a	n/a
11	GATA2	chr1:154601615-154602136	K562	blood:	n/a	n/a
12	CEBPD	chr1:154601658-154602104	K562	blood:	n/a	n/a
13	MAFF	chr1:154601663-154602104	K562	blood:	n/a	n/a
14	EP300	chr1:154601731-154602214	K562	blood:	n/a	n/a
15	JUN	chr1:154601645-154602035	K562	blood:	n/a	n/a
16	TEAD4	chr1:154601436-154602450	K562	blood:	n/a	n/a
17	CEBPB	chr1:154601835-154602168	K562	blood:	n/a	n/a
18	PML	chr1:154601560-154602176	K562	blood:	n/a	n/a
19	GATA2	chr1:154601615-154602101	K562	blood:	n/a	n/a
20	ZNF384	chr1:154601708-154602060	K562	blood:	n/a	n/a
21	BHLHE40	chr1:154601718-154602017	K562	blood:	n/a	n/a
22	ZNF143	chr1:154601631-154601999	K562	blood:	n/a	n/a
23	CBX3	chr1:154601635-154602121	K562	blood:	n/a	n/a
24	TAL1	chr1:154601557-154602186	K562	blood:	n/a	n/a
25	MYC	chr1:154601592-154602083	K562	blood:	n/a	n/a
26	MAFK	chr1:154601625-154602118	K562	blood:	n/a	n/a
27	TRIM28	chr1:154601668-154602065	K562	blood:	n/a	n/a
28	TEAD4	chr1:154601567-154602203	K562	blood:	n/a	n/a
29	CEBPB	chr1:154601717-154602097	K562	blood:	n/a	n/a
30	GATA1	chr1:154600526-154602323	PBDE	blood:	n/a	n/a
31	NR2F2	chr1:154601646-154602043	K562	blood:	n/a	n/a
32	IRF1	chr1:154601588-154602059	K562	blood:	n/a	n/a
33	HMGN3	chr1:154601734-154602050	K562	blood:	n/a	n/a
34	ZMIZ1	chr1:154601698-154602053	K562	blood:	n/a	n/a
35	RCOR1	chr1:154601450-154602117	K562	blood:	n/a	n/a
36	KAP1	chr1:154601830-154602702	K562	blood:	n/a	n/a
37	TRIM28	chr1:154601633-154602113	K562	blood:	n/a	n/a
38	PML	chr1:154601616-154602133	K562	blood:	n/a	n/a
39	MXI1	chr1:154601785-154601940	K562	blood:	n/a	n/a
40	CEBPD	chr1:154601611-154602176	K562	blood:	n/a	n/a
41	JUND	chr1:154601580-154602084	K562	blood:	n/a	n/a
42	RCOR1	chr1:154601576-154602159	K562	blood:	n/a	n/a
43	ARID3A	chr1:154601738-154602169	K562	blood:	n/a	n/a
44	EP300	chr1:154601607-154602189	K562	blood:	n/a	n/a
45	JUN	chr1:154601762-154602004	K562	blood:	n/a	n/a
46	STAT5A	chr1:154601569-154602136	K562	blood:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:154529929..154534088-chr1:154598976..154602957,6	MCF-7	breast:
2	chr1:154523967..154525511-chr1:154600222..154602147,2	MCF-7	breast:
3	chr1:154579004..154583932-chr1:154594616..154602031,16	K562	blood:
4	chr1:154573864..154581870-chr1:154594652..154602962,18	K562	blood:
5	chr1:154574387..154584697-chr1:154596875..154603021,22	MCF-7	breast:
6	chr1:154575429..154582917-chr1:154596773..154602552,13	MCF-7	breast:
7	chr1:154583710..154591836-chr1:154598416..154602140,15	MCF-7	breast:
8	chr1:154601171..154602726-chr1:154628203..154630680,2	K562	blood:

No data

Variant related genes	Relation type
ADAR	TF binding region
ENSG00000160714	Chromatin interaction
ENSG00000268141	Chromatin interaction
ENSG00000160710	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1304059	1.00[EUR][1000 genomes]
rs1395564	1.00[EUR][1000 genomes]
rs1494396	0.83[YRI][hapmap]
rs1963043	1.00[EUR][1000 genomes]
rs2131899	1.00[EUR][1000 genomes]
rs4845655	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6426859	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6426862	1.00[YRI][hapmap]
rs6690287	1.00[EUR][1000 genomes]
rs6700656	1.00[EUR][1000 genomes]
rs9427111	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	nsv521887	chr1:154236570-154684106	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
4	nsv427797	chr1:154559115-154933717	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	nsv470740	chr1:154568683-154796895	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv464050	chr1:154568683-154801247	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv547958	chr1:154568683-154801247	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154600800-154602000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr1:154601000-154602000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:154601200-154602000	Weak transcription	Liver	Liver
4	chr1:154601400-154602200	Enhancers	K562	blood

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