Variant report

Variant	rs4846626
Chromosome Location	chr1:220500240-220500241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10863546	0.92[ASN][1000 genomes]
rs12568631	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17007514	0.98[ASN][1000 genomes]
rs17007533	0.87[ASN][1000 genomes]
rs2667965	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4272630	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4846310	0.82[EUR][1000 genomes]
rs4846314	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6702901	0.86[ASN][1000 genomes]
rs7516304	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7524270	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7532002	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7534648	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001681	chr1:220425057-220548325	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv535298	chr1:220425057-220548325	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv523114	chr1:220486349-220500958	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1006979	chr1:220488188-220501518	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220498800-220503000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:220499000-220501600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:220499000-220502600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:220499000-220509400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:220499200-220500600	Weak transcription	Esophagus	oesophagus
6	chr1:220499600-220500400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr1:220499600-220500600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:220499800-220500600	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr1:220499800-220500800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:220500000-220500600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:220500000-220501800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr1:220500000-220502600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr1:220500200-220502800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links