Variant report

Variant	rs4846778
Chromosome Location	chr1:222971968-222971969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17163502	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999185	chr1:222500725-223278032	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv535304	chr1:222500725-223278032	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4846778	TLR5	cis	cerebellum	SCAN
rs4846778	HHIPL2	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222958800-222987800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:222968800-222974800	Weak transcription	Stomach Mucosa	stomach
3	chr1:222968800-222977600	Weak transcription	Colon Smooth Muscle	Colon
4	chr1:222971000-222972200	Enhancers	Rectal Smooth Muscle	rectum
5	chr1:222971200-222972000	Enhancers	Fetal Lung	lung
6	chr1:222971200-222973000	Enhancers	Primary B cells from peripheral blood	blood
7	chr1:222971400-222972000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:222971400-222972000	Enhancers	Hela-S3	cervix
9	chr1:222971400-222972000	Enhancers	HepG2	liver
10	chr1:222971400-222972600	Enhancers	Lung	lung
11	chr1:222971600-222972000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:222971600-222972800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:222971800-222972000	Enhancers	HUVEC	blood vessel
14	chr1:222971800-222972600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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