Variant report
| Variant | rs4846824 |
|---|---|
| Chromosome Location | chr1:217414922-217414923 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000142168 | Chromatin interaction |
| ENSG00000234509 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10779293 | 0.86[ASN][1000 genomes] |
| rs10863313 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11117815 | 0.80[AFR][1000 genomes] |
| rs11117818 | 0.86[JPT][hapmap] |
| rs1553350 | 0.80[AFR][1000 genomes] |
| rs4504960 | 0.86[JPT][hapmap] |
| rs4846822 | 0.86[JPT][hapmap] |
| rs4846825 | 0.86[JPT][hapmap] |
| rs7534753 | 0.86[JPT][hapmap] |
| rs7547261 | 0.86[JPT][hapmap] |
| rs7554040 | 0.86[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv549207 | chr1:217333272-217455903 | Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1003559 | chr1:217354095-217418732 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv2762164 | chr1:217389951-217742750 | Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv947382 | chr1:217406493-217418976 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
