Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10184472	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10207721	0.89[ASN][1000 genomes]
rs12470814	0.90[ASN][1000 genomes]
rs12473998	0.90[ASN][1000 genomes]
rs13003103	0.87[ASN][1000 genomes]
rs13011609	1.00[ASN][1000 genomes]
rs1504015	0.91[ASN][1000 genomes]
rs1504023	1.00[ASN][1000 genomes]
rs1587788	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1587789	1.00[ASN][1000 genomes]
rs2219107	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4848257	0.88[ASN][1000 genomes]
rs4848959	0.98[ASN][1000 genomes]
rs4848960	0.97[ASN][1000 genomes]
rs6707412	0.97[ASN][1000 genomes]
rs6712020	0.88[ASN][1000 genomes]
rs6720324	0.97[ASN][1000 genomes]
rs6721614	0.90[ASN][1000 genomes]
rs6743015	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6745271	0.97[ASN][1000 genomes]
rs6750530	0.90[ASN][1000 genomes]
rs727179	0.97[ASN][1000 genomes]
rs727180	0.97[ASN][1000 genomes]
rs7560341	0.98[ASN][1000 genomes]
rs7564755	0.98[ASN][1000 genomes]
rs7605511	0.97[ASN][1000 genomes]
rs924802	0.97[ASN][1000 genomes]
rs936028	0.90[ASN][1000 genomes]
rs936029	0.90[ASN][1000 genomes]
rs9646915	0.98[ASN][1000 genomes]
rs9646916	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834359	chr2:125367872-125536022	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
3	nsv428727	chr2:125372897-125512949	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125384200-125384400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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