Variant report
Variant | rs485473 |
---|---|
Chromosome Location | chr7:78472660-78472661 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12705807 | 0.85[ASN][1000 genomes] |
rs1642892 | 1.00[CHB][hapmap] |
rs17151572 | 1.00[CHB][hapmap] |
rs487919 | 0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs495644 | 0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs508287 | 1.00[CHB][hapmap];0.85[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs510604 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
rs521851 | 0.82[AFR][1000 genomes];0.87[ASN][1000 genomes] |
rs549795 | 1.00[CHB][hapmap] |
rs563017 | 0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv607657 | chr7:78329795-78483211 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
2 | nsv949647 | chr7:78406281-78495913 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | nsv1024961 | chr7:78432257-78483201 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
4 | nsv607658 | chr7:78456148-78473591 | Enhancers ZNF genes & repeats Weak transcription | n/a | n/a | inside rSNPs | diseases |
No data |