Variant report

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10937020	0.92[ASN][1000 genomes]
rs11718127	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12487650	0.81[ASN][1000 genomes]
rs12492526	0.85[ASN][1000 genomes]
rs12631948	0.83[EUR][1000 genomes]
rs12637429	0.83[EUR][1000 genomes]
rs1404743	0.96[ASN][1000 genomes]
rs1568860	0.84[ASN][1000 genomes]
rs16831126	1.00[ASN][1000 genomes]
rs16831219	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1830044	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1852121	0.93[ASN][1000 genomes]
rs1852122	0.89[ASN][1000 genomes]
rs1921676	0.99[ASN][1000 genomes]
rs1950124	0.99[ASN][1000 genomes]
rs2049472	0.99[ASN][1000 genomes]
rs2177723	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2339967	0.81[ASN][1000 genomes]
rs2339968	0.81[ASN][1000 genomes]
rs2879654	0.84[ASN][1000 genomes]
rs28865282	0.83[ASN][1000 genomes]
rs4854902	0.81[ASN][1000 genomes]
rs4854961	0.83[ASN][1000 genomes]
rs4854962	0.83[ASN][1000 genomes]
rs60057308	1.00[ASN][1000 genomes]
rs62290558	1.00[ASN][1000 genomes]
rs67979781	1.00[ASN][1000 genomes]
rs68014168	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7637930	0.82[ASN][1000 genomes]
rs7644566	0.90[JPT][hapmap]
rs9290696	0.81[ASN][1000 genomes]
rs939440	0.90[JPT][hapmap]
rs939441	0.90[JPT][hapmap]
rs939442	0.90[JPT][hapmap]
rs9863693	0.98[ASN][1000 genomes]
rs9871928	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534210	chr3:179666123-179899347	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv878040	chr3:179823887-180128288	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179848600-179859600	Weak transcription	HMEC	breast
2	chr3:179853800-179859800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:179859400-179860000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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