Variant report

Variant	rs4855103
Chromosome Location	chr3:179388509-179388510
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:179384877..179386564-chr3:179386761..179389238,2	MCF-7	breast:
2	chr3:179369309..179372253-chr3:179388247..179392368,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000058056	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4854945	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4140	chr3:179383961-179429704	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179372600-179403200	Weak transcription	Primary B cells from cord blood	blood
2	chr3:179372600-179408400	Weak transcription	Fetal Intestine Small	intestine
3	chr3:179372600-179425200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:179374600-179408000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:179375000-179389200	Weak transcription	Hela-S3	cervix
6	chr3:179376600-179400800	Weak transcription	Dnd41	blood
7	chr3:179380600-179418800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr3:179384400-179390600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr3:179384400-179410400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:179384600-179388800	Weak transcription	HUVEC	blood vessel
11	chr3:179384600-179389000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:179384600-179390600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr3:179384600-179397600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:179384800-179389600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:179384800-179389600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:179384800-179389600	Weak transcription	Fetal Lung	lung
17	chr3:179384800-179389800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr3:179384800-179390200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr3:179384800-179390600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:179384800-179402200	Weak transcription	Fetal Stomach	stomach
21	chr3:179384800-179406200	Weak transcription	HSMM	muscle
22	chr3:179384800-179408000	Weak transcription	Fetal Thymus	thymus
23	chr3:179384800-179415200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr3:179384800-179425000	Weak transcription	Brain Anterior Caudate	brain
25	chr3:179384800-179428400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr3:179384800-179443800	Weak transcription	Esophagus	oesophagus
27	chr3:179385000-179389200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr3:179385000-179389400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr3:179385000-179389400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr3:179385000-179389600	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr3:179385000-179389600	Weak transcription	Fetal Kidney	kidney
32	chr3:179385000-179391600	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr3:179385000-179398800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr3:179385000-179415600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr3:179385000-179439200	Weak transcription	Brain Cingulate Gyrus	brain
36	chr3:179385000-179448400	Weak transcription	Fetal Brain Male	brain
37	chr3:179385400-179390600	Weak transcription	Pancreas	Pancrea
38	chr3:179385400-179419000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr3:179385600-179391800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr3:179385600-179405400	Weak transcription	Fetal Brain Female	brain
41	chr3:179385800-179390200	Weak transcription	Fetal Muscle Leg	muscle
42	chr3:179386000-179398800	Weak transcription	Brain Germinal Matrix	brain
43	chr3:179387400-179392200	Enhancers	Left Ventricle	heart
44	chr3:179387600-179388800	Enhancers	Psoas Muscle	Psoas
45	chr3:179388000-179389600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr3:179388200-179388600	Active TSS	Ovary	ovary
47	chr3:179388200-179388600	Active TSS	Stomach Smooth Muscle	stomach
48	chr3:179388200-179389400	Weak transcription	HepG2	liver
49	chr3:179388200-179389600	Weak transcription	Fetal Heart	heart
50	chr3:179388200-179389600	Weak transcription	Lung	lung

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