Variant report

Variant	rs4855309
Chromosome Location	chr3:69388453-69388454
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs34756290	0.99[ASN][1000 genomes]
rs4855388	0.81[ASN][1000 genomes]
rs62254076	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7636200	0.92[ASN][1000 genomes]
rs9832654	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876935	chr3:69307942-69401248	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv1800315	chr3:69374729-69414587	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69372200-69403800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:69376400-69388600	Weak transcription	Aorta	Aorta
3	chr3:69378400-69390600	Weak transcription	Thymus	Thymus
4	chr3:69378400-69400600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:69380600-69393200	Weak transcription	HSMM	muscle
6	chr3:69380800-69390600	Weak transcription	Fetal Lung	lung
7	chr3:69381400-69388600	Weak transcription	Spleen	Spleen
8	chr3:69381800-69389000	Weak transcription	Lung	lung
9	chr3:69383600-69388600	Weak transcription	HUVEC	blood vessel
10	chr3:69384400-69389000	Weak transcription	Brain Angular Gyrus	brain
11	chr3:69384400-69389800	Weak transcription	Brain Anterior Caudate	brain
12	chr3:69384400-69390600	Weak transcription	Fetal Heart	heart
13	chr3:69384400-69390800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr3:69386000-69400200	Weak transcription	NHEK	skin
15	chr3:69387200-69389000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:69387200-69389400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr3:69387800-69388800	Enhancers	HepG2	liver
18	chr3:69387800-69389800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:69387800-69393600	Enhancers	Brain Hippocampus Middle	brain
20	chr3:69388000-69388600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr3:69388000-69389000	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr3:69388000-69389600	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr3:69388000-69389600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:69388000-69389800	Enhancers	Primary hematopoietic stem cells	blood
25	chr3:69388000-69390000	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr3:69388200-69389000	Enhancers	Dnd41	blood
27	chr3:69388200-69389600	Enhancers	Brain Cingulate Gyrus	brain
28	chr3:69388200-69391800	Enhancers	Brain Substantia Nigra	brain
29	chr3:69388400-69388600	Enhancers	Placenta	Placenta
30	chr3:69388400-69388800	Enhancers	HSMMtube	muscle
31	chr3:69388400-69389200	Enhancers	Left Ventricle	heart
32	chr3:69388400-69389200	Enhancers	Right Atrium	heart
33	chr3:69388400-69389400	Enhancers	Fetal Thymus	thymus
34	chr3:69388400-69389800	Enhancers	Primary neutrophils fromperipheralblood	blood

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